BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934889
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1927 0.0
> AT2G40800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G56430.1);
Has 43 Blast hits to 43 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:17024391-17026973
REVERSE LENGTH=1600
Length=1600
Score = 1927 bits (1043), Expect = 0.0
Identities = 1134/1179 (96%), Gaps = 2/1179 (0%)
Strand=Plus/Plus
Query 1 GATCGATCTAAAAGGATATATAAGATGGTGAAACCATCGGATTTTAAAGCAATTCAAGGG 60
||||||||||||||| |||| || |||||||||||||||||||| |||||||||||||||
Sbjct 181 GATCGATCTAAAAGGCTATAGAATATGGTGAAACCATCGGATTTCAAAGCAATTCAAGGG 240
Query 61 TTTATTCGATTGCATTACACTCGGGTCAACCCTGTCTCCATTGCCCGATCAAACCCATCA 120
|||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 241 TTTATTCGGCTGCATTACACTCGGGTCAACCCTGTCACAATTGGCCGATCAAACCCATCA 300
Query 121 GCTTTGTCTTCTCCAGCTATTCCCTCCAATGGTGTTCCTCAGCTTCAGCCTAAGTTTAGC 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GCTTTGTCTTCTCCAGCTATTCCCTCCAATGGTGTTTCTCAGCTTCAGCCTAAGTTTAGC 360
Query 181 TTTCACAGCTTATCCTCGAAACCCACTTCCACAAACGTGGGATTATCTCAGATTCTGTCC 240
|| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 TTCCACAGCTTATCCTCGAAACCCACTTCCAAAAACGTGGGATTATATCAGATTCTGTCG 420
Query 241 TCTCCTAAGCTCAATCCTAAGTTGCAGCAAGCTTTGGGTTTGCCTCGTGTGAATGTGAGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCCTAAGCTCAATCCTAAGTTGCAGCAAGCTTTGGGTTTGCCTCGTGTGAATGTGAGT 480
Query 301 TTTGCATCGTCGTTTAGATTGGTCTCCAATAAGAGCTCTGGATTTCGAAAGATTGATGGG 360
||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct 481 TTTGCATCGGCGTTTAGATTGGTATCCACTAAGAGCTCTGGATTTCGAAAGGTTGATGGG 540
Query 361 AACTTTGCGAGGAAGGTTGTTGATAAGCCTGTTAAAGCTGTTAGTTCTACTTTTGCTAGA 420
| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AGTTTTGCGAGAAAGGTTGTTGATAAGCCTGTCAAAGCTGTTAGTTCTACTTTTGCTAGA 600
Query 421 TACCGTGAGGCTATTGGGTTGCACGTTGATGCATTTTGGAAAAAGAATAGTCTTGTTGTG 480
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 TACCGTGAGGCTATAGGGTTGCACATTGATGCATTTTGGAAAAAGAATAGTCTTGTTGTG 660
Query 481 TTTGGAGCTGGAGGTGTTTTTGTATGTATTTTCCTGTGGAGGATTATGTTTGGAATTGCT 540
|||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 661 TTTGGAGCTGCAGGTGTTTTTGTATGTATTTTCCTTTGGCGGATTATGTTTGGAATTGCT 720
Query 541 AGTACGTTTGTTGGCCTCTCAGAGGGCATGGCCAAGTATGGGTTTCTAGCACTCTCCTCG 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 AGTACGTTTGTTGGCCTCTCAGAGGGCATGGCCAAGTATGGGTTTCTTGCACTCTCCTCA 780
Query 601 GCCATCGTAGCATTTTCTGGATTATACCTCCGCTCAAGGTTCACAATTAATCCCGATAAA 660
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 781 GCCATTGTAGCATTTTCTGGATTATACCTCCGCTCAAGGTTTACAATTAATCCGGATAAA 840
Query 661 GTTTATAGAATGACCATGAGGAAGATCAACACTGCAGCTGAAATTCTAGAAGTTATGGGT 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GTTTATAGAATGACCATGAGGAAGATCAACACGGCAGCTGAAATTCTAGAAGTTATGGGT 900
Query 721 GCTCCTCTGTCAGGATCAGATTTACGAGCTTATGTGATGTCAGGTGGTGGCATAACATTT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 GCTCCTCTGTCAGGATCAGATTTACGAGCGTATGTGATGTCAGGTGGTGGCATAACATTT 960
Query 781 AAGAAATTCAAGCCAACAATTAGGAGCAAGCGCTGCTTTCTTCTATTCCCCGTTCAGGGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAGAAATTCAAGCCAACAATTAGGAGCAAGCGCTGCTTTCTTCTATTCCCCGTTCAGGGT 1020
Query 841 TCTGAG-AGAAAGGGCCTTGTTAGCGTTGAAGTTAAGAAGAAGAAAGGCCAGTATGACAT 899
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTGAGCA-AAAGGGCCTTGTTAGCGTTGAAGTTAAGAAGAAGAAAGGCCAGTATGACAT 1079
Query 900 GAAGCTTTTGGCGGTAGATATTCCAATGGCGTCTGGTCCCGACCAACGGCTATTTCTGAT 959
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1080 GAAGCTTTTGGCGGTAGATATTCCAATGGCATCTGGTCCCGACCAACGGTTATTTCTGAT 1139
Query 960 TGGCGATGAAGAAGAGTACAGAATTGGTGGTGGTTTAATCTCTGTGTTAAGAGATCCTGT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TGGCGATGAAGAAGAGTACAGAATTGGTGGTGGTTTAATCTCTGTGTTAAGAGACCCTGT 1199
Query 1020 TGTGAAAGCCATGGCAGCAACTAAGGAGTTTGATAATCTTGATAGAATCgaagaggaaga 1079
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 TGTGAAAGCAATGGCAGCAACTAAGGAGTTCGATAATCTTGATAGAATCGAAGAGGAAGA 1259
Query 1080 agacgctgaaagagaacttcaagaagctgaaagaaagcaccgtgaagagaTCGAGAAGCT 1139
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1260 AGACGCTGAAAGAGAACTTCAAGAAGCTGAAAGAAAGCATCGTGAAGAGATCGAGAAACT 1319
Query 1140 CGAAAAAGAGGGCTCATAACTCGTATTTTCTTCCCCAGA 1178
||| || ||||||||||||||||||||||||||||||||
Sbjct 1320 CGAGAAGGAGGGCTCATAACTCGTATTTTCTTCCCCAGA 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5