BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934902
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40890.1 | Symbols: CYP98A3 | cytochrome P450, family 98, su... 2551 0.0
> AT2G40890.1 | Symbols: CYP98A3 | cytochrome P450, family 98,
subfamily A, polypeptide 3 | chr2:17058053-17060652 REVERSE
LENGTH=1885
Length=1885
Score = 2551 bits (1381), Expect = 0.0
Identities = 1495/1551 (96%), Gaps = 4/1551 (0%)
Strand=Plus/Plus
Query 21 ATGTCGTGGTTTCTAATAGCGGTGGCGTTTGTCGCCGCCGTCGTATCTTACAAGCTAATC 80
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 121 ATGTCGTGGTTTCTAATAGCGGTGGCGACAATCGCCGCCGTCGTATCCTACAAGCTAATC 180
Query 81 CAAGGGCTGAGATTCAAGTTCCCACCAGGGCCACGCCCCAAGCCGATCGTCGGTAACCTC 140
||| |||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 181 CAACGGCTAAGATACAAGTTCCCACCAGGCCCAAGCCCCAAGCCGATCGTCGGTAACCTC 240
Query 141 TACGACATAAAACCGGTCCGGTTCAGATGTTACTACGAGTGGGCTCAATCTTATGGACCA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGACATAAAACCGGTCCGGTTCAGATGTTACTACGAGTGGGCTCAATCTTATGGACCA 300
Query 201 ATCATATCGGTCTGGATCGGTTCAATTCTAAACGTCGTCGTATCTAGCGCCGAGCTAGCA 260
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 ATCATATCGGTCTGGATCGGTTCAATTCTAAACGTGGTCGTATCTAGCGCCGAGCTAGCA 360
Query 261 AAAGAAG-TCTTGAAAGAACACGACCAGAAACTCGCCGACCGGCACCGGAACAGATCAAC 319
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 AAAGAAGTTC-TGAAAGAACACGACCAGAAACTCGCCGACCGGCACCGGAACAGATCGAC 419
Query 320 GGAAGCATTTAGCCGCAACGGTCAGGATCTTATATGGGCCGATTATGGGCCTCATTACGT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAAGCATTTAGCCGCAACGGTCAGGATCTTATATGGGCCGATTATGGGCCTCATTACGT 479
Query 380 GAAGGTGAGAAAAGTTTGCACGCTTGAGCTCTTCACACCTAAACGACTCGAGTCTCTCAG 439
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GAAGGTGAGAAAAGTTTGCACGCTTGAGCTCTTCACACCGAAACGACTCGAGTCTCTCAG 539
Query 440 ACCTATCCGTGAAGATGAAGTCACCGCCATGGTTGAATCCGTCTTCAGAGACTGTAACCT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCTATCCGTGAAGATGAAGTCACCGCCATGGTTGAATCCGTCTTCAGAGACTGTAACCT 599
Query 500 TCCTGAAAACAGAGCAAAAGGTTTACAACTGCGGAAGTACTTAGGAGCGGTTGCGTTCAA 559
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TCCTGAAAACAGAGCAAAAGGTTTACAACTGAGGAAGTACTTAGGAGCGGTTGCGTTCAA 659
Query 560 CAACATAACGCGGCTAGCCTTTGGGAAGCGTTTTATGAACGCGGAAGGTGTTGTGGACGA 619
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CAACATAACGCGGCTAGCCTTTGGGAAGCGTTTTATGAACGCTGAAGGTGTTGTGGACGA 719
Query 620 TCAAGGGCTTGAATTCAAGGCCATAGTATCCAACGGTCTGAAGCTAGGTGCTTCACTATC 679
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GCAAGGGCTTGAGTTCAAGGCCATAGTATCCAACGGTCTGAAGCTAGGTGCTTCACTGTC 779
Query 680 GATAGCTGAACATATCCCGTGGCTCAGGTGGATGTTTCCGGCCGATGAGAAGGCGTTTGC 739
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 AATAGCTGAACACATCCCGTGGCTCAGGTGGATGTTTCCGGCTGATGAGAAGGCGTTTGC 839
Query 740 TGAGCACGGGGCTCGTCGCGACCGCCTCACGAGAGCTATCATGGAGGAGCACACTTTGGC 799
|||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 840 TGAGCACGGGGCTCGTCGTGACCGCCTCACTCGAGCTATCATGGAGGAGCATACTTTGGC 899
Query 800 CCGTCAAAAGTCTAGTGGAGCGAAACAGCATTTCGTTGATGCGTTGCTTACGTTGAAGGA 859
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 CCGTCAAAAGTCTAGTGGAGCGAAACAGCATTTCGTTGATGCGTTGCTAACGTTGAAGGA 959
Query 860 TCAGTATGATCTCAGTGAGGATACTATCATTGGTCTTCTATGGGATATGATCACGGCAGG 919
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCAGTATGATCTTAGTGAGGATACTATCATTGGTCTTCTATGGGATATGATCACGGCAGG 1019
Query 920 GATGGACACGACAGCGATAACAGCGGAGTGGGCGATGGCGGAAATGATCAAGAATCCAAG 979
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 GATGGACACGACAGCGATAACAGCGGAATGGGCGATGGCGGAAATGATCAAGAATCCAAG 1079
Query 980 AGTACAACAAAAGGTGCAAGAAGAGTTCGACCGAGTGGTTGGACTTGACCGGATCTTAAC 1039
||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 AGTGCAACAAAAAGTGCAAGAAGAGTTCGACAGAGTGGTTGGACTTGACCGGATCTTAAC 1139
Query 1040 CGAGCCAGATTTCTCCCGCTTACCTTACTTGCAATGCGTGGTGAAAGAGTCATTCAGGTT 1099
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1140 CGAGGCAGATTTCTCCCGCTTACCTTACTTGCAATGCGTGGTGAAAGAGTCATTCAGGCT 1199
Query 1100 GCACCCTCCGACGCCTCTTATGCTCCCTCACCGATCCAACGCAGATGTCAAGATCGGTGG 1159
||| ||||| |||||||| ||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 1200 GCATCCTCCAACGCCTCTAATGCTACCTCACCGAAGCAACGCAGATGTCAAGATCGGAGG 1259
Query 1160 CTATGATATTCCCAAAGGATCAAACGTTCATGTGAATGTTTGGGCTGTGGCTAGAGACCC 1219
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 CTATGATATTCCCAAAGGATCAAACGTTCATGTGAATGTGTGGGCTGTGGCTAGAGACCC 1319
Query 1220 GGCTGTATGGAAAAATCCATTAGAGTTTAGACCAGAGAGATTCTTGGAAGAAGATGTTGA 1279
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGCTGTATGGAAAAATCCATTTGAGTTTAGACCAGAGAGATTCTTGGAAGAAGATGTTGA 1379
Query 1280 CATGAAGGGTCATGATTTTAGGCTGCTTCCGTTTGGAGCTGGAAGACGGGTTTGTCCCGG 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CATGAAGGGTCATGATTTTAGGCTGCTTCCGTTTGGAGCTGGAAGACGGGTTTGTCCCGG 1439
Query 1340 TGCACAACTTGGTATCAATTTGGTGACTTCGATGATGAGTCATTTGCTTCACCATTTTGT 1399
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1440 TGCACAACTTGGTATCAATTTGGTAACTTCGATGATGAGTCATTTGCTTCACCATTTTGT 1499
Query 1400 TTGGACACCTCCTCAAGGGACTAAACCGGAGGATATTGACATGTCTGAAAACCCTGGACT 1459
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1500 TTGGACACCTCCTCAAGGGACTAAACCGGAGGAGATTGACATGTCTGAAAACCCTGGACT 1559
Query 1460 CGTTACTTACATGCGTACACCGGTTCAAGCCTTTGCAACGCCTCGGTTGCCTTCGGATCT 1519
|||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 1560 CGTTACTTACATGCGTACCCCTGTGCAAGCGGTTGCAACGCCTCGGTTGCCTTCGGATCT 1619
Query 1520 TTACAAACGCGTGCCTTTTGATATGTAAATGTCACTCTCG-TCTACCTTTT 1569
|||||||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct 1620 GTACAAACGCGTGCCTTACGATATGTAAATGTCACTCT-GATCTACCTTTT 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5