BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934910
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40940.1 | Symbols: ERS1, ERS | ethylene response sensor 1 |... 3140 0.0
> AT2G40940.1 | Symbols: ERS1, ERS | ethylene response sensor 1
| chr2:17084356-17087297 REVERSE LENGTH=2364
Length=2364
Score = 3140 bits (1700), Expect = 0.0
Identities = 1838/1907 (96%), Gaps = 0/1907 (0%)
Strand=Plus/Plus
Query 4 AAGTCAGAGCTCCAAAAATGGAGTCATGCGATTGTTTTGAGACGCATGTGAATCAAGATG 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AAGTCAGAGCTCCAAAAATGGAGTCATGCGATTGTTTTGAGACGCATGTGAATCAAGATG 286
Query 64 ATCTGTTAGTGAAGTACCAATACATCTCCGATGCGTTGATTGCTCTTGCCTACTTCTCAA 123
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 287 ATCTGTTAGTGAAGTACCAATACATCTCAGATGCGTTGATTGCTCTTGCATACTTCTCAA 346
Query 124 TCCCACTCGAGCTTATATATTTCGTGCAGAAGTCTGCTTTCTTCCCTTACAAATGGGTGC 183
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 347 TCCCACTCGAGCTTATCTATTTCGTGCAAAAGTCTGCTTTCTTCCCTTACAAATGGGTGC 406
Query 184 TTATGCAGTTTGGAGCCTTTATCATTCTCTGTGGAGCTACACATTTCATCAACCTATGGA 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 407 TTATGCAGTTTGGAGCCTTTATCATTCTCTGTGGAGCTACGCATTTCATCAACCTATGGA 466
Query 244 TGTTTTTCATGCATTCGAAAGCTGTTGCGATTGTGATGACTATTGCCAAAGTCTCTTGCG 303
|||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 467 TGTTCTTCATGCATTCCAAAGCCGTTGCCATTGTCATGACTATTGCTAAAGTCTCTTGCG 526
Query 304 CGGTTGTGTCGTGTGCAACTGCGTTGATGTTAGTTCATATTATTCCTGATCTTCTCAGTG 363
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 527 CGGTTGTGTCGTGTGCTACCGCGTTGATGTTGGTTCATATTATTCCTGATCTTCTCAGTG 586
Query 364 TCAAGAACCGGGAATTGTTTCTCAAGAAGAAAGCTGACGAGCTAGATAGAGAAATGGGTC 423
| |||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 587 TTAAGAACAGGGAATTGTTTCTCAAGAAGAAAGCTGATGAGTTAGATAGAGAAATGGGTC 646
Query 424 TTATTTTAACACAAGAGGAGACTGGTAGGCATGTTAGGATGCTTACTCATGGAATCAGAA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 TTATTTTAACACAAGAGGAGACTGGTAGGCATGTTAGGATGCTTACTCATGGAATTAGAA 706
Query 484 GAACGCTTGATAGACATACTATTCTAAGAACCACACTTGTTGAGCTCGGTAAAACTCTTT 543
|||| |||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 707 GAACTCTTGATAGGCATACTATTTTAAGAACCACTCTTGTTGAGCTTGGTAAAACTCTTT 766
Query 544 GCCTTGAGGAATGCGCCTTGTGGATGCCTTCTCAAAGTGGTTTATATTTGCAGCTTTCTC 603
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GTCTTGAGGAATGTGCGTTGTGGATGCCTTCTCAAAGTGGTTTATATTTGCAGCTTTCTC 826
Query 604 ATACTTTGAGCCACAAAATACAAGTTGGAAGCAGTGTGCCGATAAATCTCCCGATTATTA 663
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATACTTTGAGTCATAAAATACAAGTTGGAAGCAGTGTGCCGATAAATCTCCCGATTATTA 886
Query 664 ACGAACTCTTCAATAGCGCTCAAGCAATGCACATACCTCATACATGTCCTCTGGCTAAGA 723
| ||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||
Sbjct 887 ATGAACTCTTCAATAGCGCTCAAGCTATGCACATACCTCATTCTTGTCCTTTGGCTAAGA 946
Query 724 TTGGGCCTCCGGTTGGGAGATATTCGCCTCCCGAGGTTGTTTCTGTCCGTGTACCTCTTT 783
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 947 TTGGGCCTCCGGTTGGGAGATATTCACCTCCTGAGGTTGTTTCTGTCCGTGTTCCTCTTT 1006
Query 784 TACATCTCTCTAATTTCCAAGGCAATGACTGGTCGGATCTCTCTGGAAAAGGTTACGCTA 843
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1007 TACATCTCTCTAATTTCCAAGGCAGTGACTGGTCGGATCTCTCTGGCAAAGGTTACGCTA 1066
Query 844 TCATGGTCCTGATTCTCCCAACCGATGGTGCAAGAAAATGGAGAGACCATGAGTTAGAGC 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TCATGGTCCTGATTCTCCCAACCGATGGTGCAAGAAAATGGAGAGACCATGAGTTAGAGC 1126
Query 904 TTGTGGAAAACGTGGCGGATCAGGTGGCTGTGGCTCTCTCACACGCTGCAATTTTGGAGG 963
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1127 TTGTAGAAAACGTGGCGGATCAGGTGGCTGTGGCTCTCTCACATGCTGCAATTTTGGAAG 1186
Query 964 AATCCATGCATGCTCGTGACCAGCTTATGGAGCAGAATTTTGCTTTAGACAAGGCTCGTC 1023
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 AATCCATGCACGCTCGTGACCAGCTTATGGAGCAGAATTTTGCTTTAGACAAGGCTCGTC 1246
Query 1024 AAGAGGCAGAGATGGCAGTACATGCTCGAAATGATTTCCTAGCTGTCATGAACCACGAGA 1083
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1247 AAGAGGCTGAGATGGCAGTACATGCTCGAAATGATTTCCTAGCTGTTATGAACCACGAGA 1306
Query 1084 TGAGGACACCGATGCATGCCATCATCTCTCTGTCTTCTCTCCTCCTTGAGACGGAGCTGT 1143
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1307 TGAGGACACCGATGCATGCCATCATCTCTCTTTCTTCTCTTCTCCTTGAGACTGAGCTGT 1366
Query 1144 CTCCAGAACAGAGAGTTATGATCGAGACAATACTGAAAAGCAGCAATCTTGTGGCTACAC 1203
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 CTCCAGAGCAAAGAGTTATGATCGAGACAATACTGAAAAGCAGCAATCTTGTGGCTACAC 1426
Query 1204 TCATCAGCGACGTTCTGGATCTTTCAAGATTGGAAGATGGGAGCTTACTCTTGGAAAATG 1263
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1427 TAATCAGCGACGTTCTGGATCTTTCGAGATTGGAAGATGGGAGCTTACTCTTGGAAAATG 1486
Query 1264 AACCATTCAGTCTACAAGCGATCTTTGAAGAGGTCATCTCTCTCATAAAGCCAATCGCAT 1323
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1487 AACCATTCAGTCTACAAGCGATCTTTGAAGAGGTCATCTCTTTGATAAAGCCAATCGCAT 1546
Query 1324 CGGTGAAGAAACTATCAACGAATCTGATTCTATCTGCAGACTTACCAACTTATGCTATTG 1383
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1547 CAGTGAAGAAACTATCAACGAATCTGATTCTGTCTGCAGACTTACCAACTTATGCTATTG 1606
Query 1384 GTGATGAGAAACGTCTGATGCAAACTATTCTCAACATCATGGGCAACGCTGTGAAATTCA 1443
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1607 GTGATGAGAAACGTCTGATGCAAACAATTCTTAACATCATGGGCAACGCTGTGAAATTTA 1666
Query 1444 CCAAGGAAGGCTACATCTCCATAATAGCCTCTATCATGAAACCCGAGTCCTTACAAGAAT 1503
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 CTAAGGAAGGCTACATCTCCATAATAGCCTCTATCATGAAACCCGAGTCCTTACAAGAAT 1726
Query 1504 TACCATCTCCAGAATTCTTTCCAGTTTTCAGTGACAGTCACTTCTACCTATGCGTGCAGG 1563
|||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1727 TACCATCTCCAGAATTTTTTCCAGTTCTCAGTGACAGTCACTTCTACCTATGTGTGCAGG 1786
Query 1564 TGAAGGACACAGGGTGTGGAATTCACACACAAGACATTCCTTTGCTCTTTACCAAATTTG 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 TGAAGGACACAGGGTGTGGAATTCACACACAAGACATTCCTTTGCTCTTTACCAAATTTG 1846
Query 1624 TACAGCCACGGACTGGAACTCAGAGGAACCATTCCGGTGGAGGACTCGGGCTAGCTCTCT 1683
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 TACAGCCTCGGACCGGAACTCAGAGGAACCATTCCGGTGGAGGACTCGGGCTAGCTCTCT 1906
Query 1684 GTAAACGGTTTGTCGGGCTAATGGGAGGATACATGTGGATAGAAAGCGAAGGCCTAGAGA 1743
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1907 GTAAACGGTTTGTCGGGCTAATGGGAGGATACATGTGGATAGAAAGTGAAGGCCTAGAGA 1966
Query 1744 AAGGCTGCACAGCTTCGTTTATCATCAGGCTCGGTATCTGCAACGGTCCAAGCAGTAGCA 1803
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1967 AAGGCTGCACAGCTTCGTTCATCATCAGGCTTGGTATCTGCAACGGTCCAAGCAGTAGCA 2026
Query 1804 GTGGTTCAATGGCGCTACATCTTGCAGCTAAATCACAAACCAGACCGTGGAACTGGTGAT 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 GTGGTTCAATGGCGCTACATCTTGCAGCTAAATCACAAACCAGACCGTGGAACTGGTGAT 2086
Query 1864 ACATTACGTTGGAAAGACTTGTATTGAGGAGAGACTTTTTAACTACA 1910
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2087 ACATTACGTTGGAAAGACTTGTATTGAGGTGAGACTTTTTAACTACA 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94577826780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5