BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934925
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41050.1 | Symbols: | PQ-loop repeat family protein / trans... 1908 0.0
AT4G20100.1 | Symbols: | PQ-loop repeat family protein / trans... 429 3e-119
> AT2G41050.1 | Symbols: | PQ-loop repeat family protein / transmembrane
family protein | chr2:17123190-17126349 REVERSE LENGTH=1545
Length=1545
Score = 1908 bits (1033), Expect = 0.0
Identities = 1135/1183 (96%), Gaps = 12/1183 (1%)
Strand=Plus/Plus
Query 1 GGTTTTTGGCTGTGAAGAAGATGTTTCTCCACAGCAGTTTTAGAGATGGATTGTCATTAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 197 GGTTTTTGGCTGTGAAGAAGATGTTTCTCCACAGCAGTTTTAGAGATGGATTGTCATTGT 256
Query 61 CTCTTGGTGTCATCAGTGTTATCAGTTGGGGTGTTGCCGAGATACCTCAGATTATGACTA 120
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 257 CTCTTGGTATCATCAGTGTTATCAGTTGGGGTGTTGCTGAGATACCTCAGATTATGACTA 316
Query 121 ATTACAGTGAGAAATCCACTGAAGGTCTATCTATTGCCTTCTTAACGACGTGGATAATTG 180
|||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||
Sbjct 317 ATTACAGTGAGAAATCCACTGAAGGTCTCTCTATTACCTTCTTAACAACGTGGATGATTG 376
Query 181 GGGATATCTTCAATCTTCTTGGCTGCTTGATGGAACCAGCTACTCTTCCAACACAATTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GGGATATCTTCAATCTTCTTGGCTGCTTGATGGAACCAGCTACTCTTCCAACACAATTCT 436
Query 241 ACATGGCACTGTTGTATACAGTGACTACATCAGTTCTCTATGTTCAATCTATATATTACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 ACATGGCACTGTTGTATACAGTGACTACATCAGTTCTCTATGTTCAATCTATATATTACG 496
Query 301 GCCATATCTACTCGCGGTTGAAAAACAGAAGAAATCAGATGGTTGAAGCAGAACGTATAT 360
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 497 GCCATATCTACCCGCGGTTGAAAAACAGAAGAGATCAGATGGTTGAAGCAGAACGTATAT 556
Query 361 CTAGTATAAGCAGTGATGTTAAAATTCCGGGCAGATGGAGAAATAGCTCTGATACTACTA 420
| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CAAACATAATCAGCGATGTTAAAATTCCGGGCAGATGGAGAAATAGCTCTGATACTACTA 616
Query 421 CTTGTGGCGGTCAAACCACACCTATCACTATGATTCCTGGGAGTCATCGAACTAGTTTTA 480
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 617 CTTGTGGTGGTCAAACCACACCTATCACTATGATTCCTGGGAGTCAACGAACTAGTTTTA 676
Query 481 CCGGAAGAGAACTATTTTACACGTCGGCAAGATCTTTGTCGAGTAGTCATACACCACCAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CCGGAAGAGAACTATTTTACACGTCGGCAAGATCTTTGTCGAGTAGTCATACACCACCAG 736
Query 541 CTGGATCTGTCTTAGCTCAAAGAATGGCTCGTGGTCACAGTGAACCAACTCTTGAAGAGC 600
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 737 CTGGATCTGTCTTAGCTCAGAGAATGGCTCGTGGTTACAGTGAACCAACTCTTGAAGAGC 796
Query 601 CCTTGCTTCCTGAGGATGCCACACCTCCTTCATTGCCTCCTTCCACCAAATCAATGCTTT 660
|||||||||||||||||| ||| | || ||| | ||||||||||| ||||||
Sbjct 797 CCTTGCTTCCTGAGGATGTCACGC-------AT--CCT--T-CCACCAAATCATTGCTTT 844
Query 661 GCGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAACCTTCCCAATTTGCTAAGTGAAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GCGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAACCTTCCCAATTTGCTAAGTGAAT 904
Query 721 CAAGGACTATGGCTTTGGGTGAGAGAGATAGAGTATTTGTAGTTCGAGCAGCAAGAAAGC 780
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 905 CAAGAACTATGGCTTTGGGTGAGGGAGATAGAGTATTTGTAGTTCGAGCAGCAAGAAAGC 964
Query 781 TTTTGCAGGTCACTAGCAACAACCTAGGAGAACATAGCGGTGGAGAAAGCAGCAGAATTG 840
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 965 TTTTGCAGGTCACTAGCAGCAACGTAGCAGAACATAGCGGTGGAGAAAGCAGCAGAATTG 1024
Query 841 GAATGTTTTTGGGTTGGGCAATGGCAGCCATTTACATGGGTGGAAGGCTTCCCCAAATAT 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1025 GAATGTTTTTGGGTTGGGCAATGGCAGCCATATACATGGGTGGAAGGCTTCCCCAAATAT 1084
Query 901 GTCTCAATATGAGGAGAGGACATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCAT 960
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GTCTCAATATGAGGAGAGGGCATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCAT 1144
Query 961 TAGTTGGCAATATGACTTATGTTGCAAGTATACTTGTAAACAGCGTCGAATGGTTAAAAA 1020
|||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||
Sbjct 1145 TAGTTGGCAATATGACTTATGTTGCAAGCATACTCGTGAACAGTGTCGAATGGTTAAAAC 1204
Query 1021 TTGCACCGAATCTACCATGGCTTGTTGATGCAGGAGGATGTGTTGTGCTTGATTTTCTTA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TTGCACCGAATCTACCATGGCTTGTTGATGCAGGAGGATGTGTTGTGCTTGATTTTCTTA 1264
Query 1081 TTCTGCTTCAGTTTTTCCACTTCCGCTGTCGCAAAGACAAAGATACTGACAAGAAGAAGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TTCTGCTTCAGTTTTTCCACTTCCGCTGTCGCAAAGACAAAGATACTGACAAGAAGAAGC 1324
Query 1141 ATGAAACTGCAGAAGCGGTCTAAGGCTTGTGACTACTCCAACA 1183
||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1325 ATGAAACCGCAGAAGCTGTCTAAGGCTTGTGACTACTTCAACA 1367
> AT4G20100.1 | Symbols: | PQ-loop repeat family protein / transmembrane
family protein | chr4:10873999-10874865 REVERSE LENGTH=867
Length=867
Score = 429 bits (232), Expect = 3e-119
Identities = 443/539 (82%), Gaps = 38/539 (7%)
Strand=Plus/Plus
Query 638 TCCTTCCACCAAATCAATGCTTTGCGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAA 697
|||||| |||||||| |||| || ||||||||||||||||||||||||||| |||||||
Sbjct 354 TCCTTCTACCAAATCGTTGCTATGTGTGGTCTCGGTGTTCTTGTTTCTTGGATCATTCAA 413
Query 698 CCTTCCCAATTTGCTAAGTGAATCAAGGACTATGGCTTTGGGTGAGAGAGATAGAGTATT 757
| | | ||| |||| ||||| | ||||| |||| | | || ||||||||| ||
Sbjct 414 -CGT----A-TTG---AGTGGTTCAAGAAGTATGGATTTGAGAGGGAAAGATAGAGTGTT 464
Query 758 TGTAGTT---CGAGC---AGCAAGAAAGCTTTTGCAGGTCACTAGCAACAACCTAGGAGA 811
||||||| |||| |||||||||||||||| ||||| ||||| ||| |||||||
Sbjct 465 TGTAGTTGGAGGAGCAGGAGCAAGAAAGCTTTTGGAGGTCTCTAGCGGTAACTTAGGAGA 524
Query 812 ACATAGCGGTGGAGAAAGCAGCAGAATTGGAATGTTTTTGGGTTGGGCAATGGCAGCCAT 871
| | | | || || | |||||||||| ||||||||||||||||| || ||
Sbjct 525 A-A-A-C--------AA-CA--A-TATTGGAATGTGGTTGGGTTGGGCAATGGCGGCGAT 569
Query 872 TTACATGGGTGGAAGGCTTCCCCAAATATGTCTCAATATGAGGAGAGGACATGTTGAGGG 931
||||||||||||||||||||| ||||||||| | ||| | ||||||||| ||||||||||
Sbjct 570 TTACATGGGTGGAAGGCTTCCTCAAATATGTATGAATGTAAGGAGAGGAAATGTTGAGGG 629
Query 932 ATTGAATCCATTGATGTTCTTCTTTGCATT-AGTTGGCAATATGACTTATGTTGCAAGTA 990
|||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||| |
Sbjct 630 ATTGAATCCATTAATGTTCTTCTTTGCATTCA-TTGGCAATGTGACTTATGTTGCAAGCA 688
Query 991 TACTTGTAAACAGCGTCGAATGGTTAAAAATTGCACCGAATCTACCATGGCTTGTTGATG 1050
|||| || |||||||||||||||| ||||| | |||||||||||||||||| ||||||
Sbjct 689 TACTAGTGAACAGCGTCGAATGGTCGAAAATCGAACCGAATCTACCATGGCTAGTTGATT 748
Query 1051 CAGGAGGATGTGTTGTGCTTGATTTTCTTATTCTGCTTCAGTTTTTCCACTTCCGCTGTC 1110
|||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |||||
Sbjct 749 CAGGAGGATGTGCTGTTCTTGATTTTCTTATTCTGCTTCAGTTTTTCTACTTTCACTGTC 808
Query 1111 GCAAAGACAA---AGATACTGACAAGAAGAAGCATGAAAC---TGCAGAAGCGGTCTAA 1163
|||||| | | |||| | | |||||||||||||||||| || |||||| ||||||
Sbjct 809 GCAAAGTCGAGGCAGATTCCGTCAAGAAGAAGCATGAAACCGGTGAAGAAGCTGTCTAA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5