BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934926
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2087 0.0
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr... 660 0.0
> AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17126989-17129563 FORWARD LENGTH=1787
Length=1787
Score = 2087 bits (1130), Expect = 0.0
Identities = 1309/1392 (94%), Gaps = 26/1392 (2%)
Strand=Plus/Plus
Query 2 AAAACCCACCAATTCCATCATGGCAAAGAAGAGAAAGCTCGAATCTGAATCCAACGAAAC 61
|||| || |||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 132 AAAA-CCGCCAATTCCGTTATGACAAAGAAGAGAAAGCTCGAATCTGAATCCAACGAAAC 190
Query 62 GTCAGAGCCGACGGAG-A--AGCAGCTGCAATGTGAAAAAGAGGATCCGGAAATCAGAAA 118
|||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 191 GTCAGAGCCGACGGAGAAGCAGCAGCAGCAATGTGAAAAAGAGGATCCGGAAATCAGAAA 250
Query 119 TGATGATAAACAGAGAGACGACGACGAAGAAGTAGTAGGA-CAAGACGCACT-----A-A 171
|| |||||| || ||||||||||||||| |||||||| || |||||| |||| | |
Sbjct 251 TGTTGATAATCAAAGAGACGACGACGAACAAGTAGTA-GAGCAAGACACACTAAAGGAGA 309
Query 172 ---A-G--GAGGAAGCTAAAGGTGAAGATAATACAGAGGCGGAGACGTCGTCCGGATCTG 225
| | ||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 310 TGCACGAAGAGGAAGCTAAAGGTGAAGATAACATAGAAGCGGAGACGTCGTCCGGATCTG 369
Query 226 GGAATCGGGGAAATGAGGATGATGACGAAGAAGAACCCATCGAGGATCTATTGGAACCGT 285
|||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 370 GGAATCAAGGAAATGAGGATGATGACGAAGAAGAACCTATTGAGGATCTATTGGAACCGT 429
Query 286 TTTCAAAAGATCAACTTTTGATTCTTCTCAAGGAAGCTGCAGAGAGACATCGCGATGTTG 345
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 430 TTTCAAAGGATCAACTTTTGATTCTTCTCAAGGAAGCTGCAGAGAGACATCGCGATGTAG 489
Query 346 CTGATCGAATCCGGATTGTGGCGGATGAAGATTC-TGTTCATCGTAAGATCTTCGTTCAC 404
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 490 CTAATCGAATCCGGATTGTGGCGGATGAAGA-TCTTGTTCATCGTAAGATCTTCGTTCAC 548
Query 405 GGGCTTGGATGGGATACTAAAGCCGAAACACTTATCGAAGCTTTTAAGCAATACGGAGAG 464
||||||||||||||||||||||| || |||||||||| |||||||| || |||||||||
Sbjct 549 GGGCTTGGATGGGATACTAAAGCTGATTCACTTATCGACGCTTTTAAACAGTACGGAGAG 608
Query 465 ATCGAAGATTGCAAATGTGTGGTTGATAAGATTTCTGGGCAATCTAAAGGTTATGGCTTT 524
|| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 609 ATTGAAGATTGCAAATGTGTGGTTGATAAGGTATCTGGGCAATCTAAAGGTTATGGCTTT 668
Query 525 ATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAACGCTCTTAAGCAGCCTCAGAAGAAGATT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAACGCTCTTAAGCAGCCTCAGAAGAAGATT 728
Query 585 GGAACTCGTATGACTGCTTGCCAGCTGGCGTCTATAGGACCTGTTCAGGGAAACCCTGTC 644
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 729 GGAACTCGTATGACTGCGTGCCAGCTGGCGTCTATAGGACCTGTTCAGGGGAACCCTGTT 788
Query 645 GTGGCTCCTGCTCAGCATTTCAATCCTGAGAATGTTCAGAGGAAGATCTATGTTAGTAAC 704
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 789 GTGGCTCCTGCTCAGCATTTCAATCCTGAGAATGTTCAGAGGAAGATTTATGTCAGTAAC 848
Query 705 GTTAGTGCAGATC-TTGATCCGCAGAAGCTGCTGGAGtttttttCAAGATTTGGGGAGAT 763
||||||||||| | |||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 849 GTTAGTGCAGA-CATTGATCCGCAGAAGTTGCTGGAGTTTTTCTCAAGGTTTGGGGAGAT 907
Query 764 TGAAGAAGGTCCTTTGGGGCTTGATAAAGTTACTGGGAGACCTAAAGGTTTCGCTTTGTT 823
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 908 AGAAGAAGGTCCTTTGGGGCTTGATAAAGCTACTGGGAGACCTAAAGGTTTCGCTTTGTT 967
Query 824 TGTCTATAGATCCCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TGTCTATAGATCCCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGA 1027
Query 884 AGGCCATGTCTTGCATTGCCACAAAGCAAATGATGGGCCTAAACAGGTTAAGCAACATCA 943
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1028 AGGCCATGTCTTGCATTGCCACAAAGCAAATGATGGGCCAAAACAGGTTAAGCAACATCA 1087
Query 944 ACATAACCATAACTCTCACAATCAAAATTCCCGCTACCAAAGGAACGACAGCAATGGTTA 1003
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1088 ACATAACCATAACTCTCACAATCAAAATTCCCGTTACCAAAGGAACGACAACAATGGTTA 1147
Query 1004 TGGTGCACCTGGAGGCCATGGACATTTCATAGCTGGTAATAACCAAGCTGCGCAGGCGTT 1063
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1148 TGGTGCCCCTGGAGGCCATGGACATTTCATAGCTGGTAATAACCAAGCTGTGCAGGCGTT 1207
Query 1064 TAACCCGGCTATTGGCCAAGCCCTTACAGCTTTGCTGGCATCTCAGGGTGCTGGGTTGGG 1123
||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1208 TAATCCGGCCATTGGCCAGGCCCTCACAGCTTTGCTGGCATCTCAGGGTGCTGGGTTGGG 1267
Query 1124 TTTGAACCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGGACAGCTAGCCCAGGAGC 1183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TTTAAACCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGGACAGCTAGCCCAGGAGC 1327
Query 1184 TGTAGGAGGAATGCCAAGTGGCTATGGTACTCAAGCAAATATCACGCCTGGGGTCTATCC 1243
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1328 TGTAGGTGGAATGCCAAGTGGCTATGGTACTCAAGCAAATATCTCACCTGGGGTCTATCC 1387
Query 1244 TGGGTACGGTGCCCAAGCCGGGTTTCAGGGCGGTTATCAGACTCAGCAACCTGGTCAGGG 1303
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1388 TGGGTACGGTGCTCAAGCCGGGTACCAGGGCGGTTATCAGACTCAGCAACCTGGTCAGGG 1447
Query 1304 CGGTGCTGGAAGAGGGCAGCATGGTGTTGGGTATGGTGGTCCTTACATGGGTC---AGAT 1360
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1448 CGGTGCGGGAAGAGGGCAGCATGGTGCTGGGTATGGTGGTCCTTACATGGGTCGTTAGAT 1507
Query 1361 GTAGCCACTCAG 1372
|||||||||||
Sbjct 1508 -TAGCCACTCAG 1518
> AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21048745-21052286
REVERSE LENGTH=2614
Length=2614
Score = 660 bits (357), Expect = 0.0
Identities = 954/1227 (78%), Gaps = 102/1227 (8%)
Strand=Plus/Plus
Query 200 AGAGGCGGAGACGTCGTCCGGATCTGGGAATCGGGGAAATGAGGATGATGACGAAGAAGA 259
|||||||| | || |||| |||||||| |||| || || ||||||||| || ||
Sbjct 382 AGAGGCGGCGGCGACGTCTGGATCTGGCAATC-----AA-GAAGATGATGAC---GATGA 432
Query 260 ACCCA-TCGAGGATCTATTGGAACCGTTTTCAAAAGATCAACTTTTGATTCTTCTCAAGG 318
||| | || ||||||| |||||||| |||||||| || ||| |||||| |||||| ||||
Sbjct 433 ACCAATTC-AGGATCTGTTGGAACCATTTTCAAAGGAGCAAGTTTTGAGTCTTCTTAAGG 491
Query 319 AAGCTGCAGAG-AGACATCG-CGATGTTGCTGATCGAA-TCCGGATTGTGGCGGATGAAG 375
|||| || ||| || ||| | ||||| || |||||| | ||| || || ||||| |
Sbjct 492 AAGCAGCGGAGAAG-CAT-GTTGATGTAGCCAATCGAATTAGGGA-AGTAGCTGATGAGG 548
Query 376 ATTCTGTTCATCGTAAGATCTTCGTTCACGGGCTTGGATGGGATACTAAAGCCGAAACAC 435
| |||||||||| |||||||| || ||||| ||||| |||||||| ||| | || || |
Sbjct 549 ACCCTGTTCATCGGAAGATCTTTGTGCACGGTCTTGGTTGGGATACGAAAACAGAGACGC 608
Query 436 TTATCGAAGCTTTTAAGCAATACGGAGAGATCGAAGATTGCAAATG-TGTGGTTGATAAG 494
|||| |||||||||||||| ||||||||||||||||||||| || | |||| ||||||||
Sbjct 609 TTATTGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTGC-AAGGCTGTGTTTGATAAG 667
Query 495 ATTTCTGGGCAATCTAAAGGTTATGGCTTTATCCTCTTTAAGTCAAGGTCTGGTGCTCGT 554
|| || ||| |||||||||||||||||||||| || | ||||| | || ||||||||
Sbjct 668 ATCTCAGGGAAATCTAAAGGTTATGGCTTTATTCTGTACAAGTCTCGTTCAGGTGCTCGC 727
Query 555 AACGCTCTTAAGCAGCCTCAGAAGAAGATTGGAACTCGTATGACTGCTTGCCAGCTGGCG 614
||||| || ||||||||||||||||||||||| | ||||||||| || ||||| ||||
Sbjct 728 AACGCACTCAAGCAGCCTCAGAAGAAGATTGGTAGTCGTATGACGGCATGCCAATTGGCT 787
Query 615 TCTATAGGACCTG--TTCAG-GGA------AACCCTG-T-C-G-TG-----GCTCCTGCT 656
|||| |||||||| || | ||| | | ||| | | | || || ||||||
Sbjct 788 TCTAAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGCAGCTGTTTCAGCGCCTGCT 847
Query 657 CAGCATTTC-AATC-CTGAGAATGTTCAGAGGAAGATCTATGTTAGTAACGTTAGTGCAG 714
||||| ||| || | | ||| || ||||| ||||| ||||||||||| || | ||||
Sbjct 848 CAGCA-TTCGAA-CTCGGAGCATACTCAGAAAAAGATTTATGTTAGTAATGTCGGAGCAG 905
Query 715 ATCTTGATCCGCAGAAGCTGCTGGA-GtttttttC-AAGATTTGGGGAGATTGAAGAAGG 772
| |||||||| |||||| |||| || |||||| || ||| ||||| || |||||||||||
Sbjct 906 AGCTTGATCCACAGAAGTTGCT-GATGTTTTTCTCAAAG-TTTGGAGAAATTGAAGAAGG 963
Query 773 TCCTTTGGGGCTTGATAAAGT-TACTGGGAGACCTAAAGGTTTC-GCTTTGTTTGTCTAT 830
||||||||| |||||| |||| |||||||||||||||||||||| | | | ||||| |||
Sbjct 964 TCCTTTGGGTCTTGAT-AAGTATACTGGGAGACCTAAAGGTTTCTG-TCTCTTTGTTTAT 1021
Query 831 -AGATC-CCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGAAGGCC 888
|| || || ||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1022 AAG-TCGTCT-GAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGACTTTTGAAGGCC 1079
Query 889 ATGTCTTGCATTGCCACAAAGCAAAT-GATGGGCCTAAACAGGTTAAGCAACATCAACAT 947
|| ||||||||||||| ||||| | | ||||| || |||| || ||||| || || |||
Sbjct 1080 ATATCTTGCATTGCCAGAAAGCTA-TCGATGGTCCCAAACCGGGCAAGCAGCAGCAGCAT 1138
Query 948 AACCATAACTCTCACA---ATCAA-AATTCC-CGCTACCAAAGGAACGACAGCAATGGTT 1002
|||||||| | ||| || || ||| || || ||||||||||| || | ||||||||
Sbjct 1139 CACCATAACCCACACGCCTAT-AACAAT-CCTCGTTACCAAAGGAATGATAACAATGGTT 1196
Query 1003 ATGGTGCACCTGGAGGCCATGGACATTTCATAGCTGGTAATA-ACCAAGC-TGCG----C 1056
||||| | |||||||| ||||||||| |||| |||||||| | | | || | |
Sbjct 1197 ATGGTCCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGGATGGGTGGTC 1256
Query 1057 -A--GGC---GTT--TAA-CCCGGCTATTGGCCAAGCCCTT-ACAGCTTTGCTGGCATCT 1106
| ||| | | ||| |||||| ||||| || ||| || |||||||| ||||||||
Sbjct 1257 CAACGGCACAGGTGATAAACCCGGCCATTGGACAGGCC-TTGACAGCTTTATTGGCATCT 1315
Query 1107 CAGGGTGCTGGGTTGGGTTTGAA-CCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGG 1165
||||| ||||| |||| ||| || || ||| |||| |||||||||||||| | || ||
Sbjct 1316 CAGGGAGCTGGTTTGGCTTTTAATCCG-GCAATTGGACAGGCTTTGTTGGGTTCCTTGGG 1374
Query 1166 GACAGCTA--G-------CCCAGG-AGCTGTAGGAGGAATGCCAAGTGGCTATGGTACTC 1215
||||||| | |||||| | || || |||||||||| ||| || |||||||
Sbjct 1375 GACAGCTGCTGGTGTAAACCCAGGGAA-TGGAGTTGGAATGCCAACTGGTTACGGTACTC 1433
Query 1216 AAGCAAATATCACGCCTGGGGTCTAT-CCTGGGTACGGTGCCCAAGCC-GGGTTTCAGGG 1273
|||| | | ||| | |||| | || |||||||||||| | ||| || ||||| || ||
Sbjct 1434 AAGCTA-TGGCAC-C--GGGGACAATGCCTGGGTACGGTACACAA-CCTGGGTTGCAAGG 1488
Query 1274 CGGTTATCAGACTCAGCAACCTGGTCAGGGCGGTGCTGGAAGAGGGCAGCATGGTGTTGG 1333
|||||||||||||| |||||||||||| |||||| | | |||||||| |||||||| ||
Sbjct 1489 CGGTTATCAGACTCCGCAACCTGGTCAAGGCGGTACAAGTAGAGGGCAACATGGTGTCGG 1548
Query 1334 GT-AT--GGTGGTCCTTACATGGGTCA 1357
| || ||| |||||||||||||||
Sbjct 1549 GCCATACGGTACTCCTTACATGGGTCA 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68172340110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5