BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934929
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41100.1 | Symbols: TCH3, ATCAL4 | Calcium-binding EF hand f... 872 0.0
AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-1714... 122 3e-27
> AT2G41100.1 | Symbols: TCH3, ATCAL4 | Calcium-binding EF hand
family protein | chr2:17138073-17139610 FORWARD LENGTH=1237
Length=1237
Score = 872 bits (472), Expect = 0.0
Identities = 631/706 (89%), Gaps = 18/706 (3%)
Strand=Plus/Plus
Query 12 AAAAAGAACAATGGTGGATCAGCTCACTGACGAACAGATCT-CGGAATTCAAGGAAGCCT 70
||||| |||||||| |||| ||||||||||||| ||||| | | || | || |||| | |
Sbjct 317 AAAAA-AACAATGGCGGATAAGCTCACTGACGATCAGAT-TACAGAGTACAGGGAATCTT 374
Query 71 TCAGGGTATTCGACAAGAATGGTGATGGTGT-CATTACCAGAAAGGAGCTCGGTACCGTG 129
||||| ||||||||||||||||||||||| | |||||| | |||||||||| ||||||||
Sbjct 375 TCAGGTTATTCGACAAGAATGGTGATGGT-TCCATTACGAAAAAGGAGCTCCGTACCGTG 433
Query 130 ATGCGTTCTCTCGGTCAAAACCTGACCCAAGCTGAGCTTCAGGACGCGATGAACGAAGTG 189
||| ||| |||||| |||||| ||| ||||||| ||||||||| |||||||||||||
Sbjct 434 ATGTTTTCCCTCGGTAAAAACCGGACAAAAGCTGATCTTCAGGACATGATGAACGAAGTG 493
Query 190 GATTTAGATGGTAATGGAACCATCGATTTCCCTGAGTT-TGTGTGTGTAATGGCTAAGAA 248
|||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 494 GATTTAGATGGTGATGGAACCATCGATTTCCCTGAGTTCT-TGTACCTAATGGCTAAGAA 552
Query 249 TCTAA-GTCATGATCAAGTGCCGCCGCGTCAAACTaaaaaaaCAATGGTGGATTATCAGC 307
|| || ||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 553 TC-AAGGTCATGATCAA--G-CGCCGCGTCACACTAAAAAAACAATGGTGGATTATCAGC 608
Query 308 TCACTGACGATCAGATCTCAGAATTCAAGGAAGCCTTCCGCTTATTCGACAAGAATGGTG 367
|||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||
Sbjct 609 TCACTGACGATCAGATCTTAGAATTCAGGGAAGCCTTCCGCGTATTCGACAAGAATGGTG 668
Query 368 ATGGTTACATTACCGTAAATGAGCTCCGTATTACTATGAGCTCCCTCGGTGAAAACCAAA 427
|||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||| |||||
Sbjct 669 ATGGTTACATTACCGTGAATGAGCTCCGTACTACTATGCGCTCCCTTGGTGAAACCCAAA 728
Query 428 CAAAAGCTGAGCTTCAGGACATGATCAACGAAGCAGATGCAGATGGTGATGGAACCATCA 487
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 729 CAAAAGCTGAGCTCCAGGACATGATCAACGAAGCGGATGCAGATGGTGACGGAACCATCA 788
Query 488 GTTTCCCTGAGTTTGTGTGTGTAATGGCTGGGAAAATGACTGACTCTGAGG--AAGAA-G 544
||||| |||||||||||||||||||| |||| ||||||| |||| || || ||||| |
Sbjct 789 GTTTCTCTGAGTTTGTGTGTGTAATGACTGGTAAAATGATTGACACTCAGTCTAAGAAAG 848
Query 545 ---CGTACAGAGTTGCGAATCAAGGTCAGGGTCAAGTGCCGCGTCACACTAAAAATGACA 601
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 849 AAACGTACAGAGTTGTGAATCAAGGTCAGGGTCAAGTGCAGCGTCACACTAGAAATGACA 908
Query 602 GAACTGGTGGCACTAATTGGGAGAGGGACATTGCGGTCGGGGTTGCCAGCAATATCATCG 661
|| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 909 GAGCTGGTGGCACCAATTGGGAGAGGGACATAGCGGTCGGGGTTGCCAGCAATATCATCG 968
Query 662 CTTCGCCAATTACCGACTTCATTAAAGATTTGTTTAAAGAGTTGtt 707
||||||||||| |||||||||| |||||| ||||||||| |||||
Sbjct 969 CTTCGCCAATTTCCGACTTCATGAAAGATAGGTTTAAAGATTTGTT 1014
> AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-17141393
FORWARD LENGTH=837
Length=837
Score = 122 bits (66), Expect = 3e-27
Identities = 82/89 (92%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 284 aaaaaaCAATGGTGGATTATCAGCTCACTGACGATCAGATCTCAGAATTCAAGGAAGCCT 343
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 143 AAAAAACAATGGCGG---ATCAGCTCACAGACGATCAGATCTCAGAATTCAAGGAAGCCT 199
Query 344 TCCGCTTATTCGACAAGAATGGTGATGGT 372
|| |||||||||||||| |||||||||||
Sbjct 200 TCAGCTTATTCGACAAGGATGGTGATGGT 228
Score = 111 bits (60), Expect = 7e-24
Identities = 117/143 (82%), Gaps = 10/143 (7%)
Strand=Plus/Plus
Query 409 TCCCTCGGTGAAAACCAAACAAAAGCTGAGCTTCAGGACATGATCAACGAAGCAGATGCA 468
||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 301 TCCCTCGGTCAAAACCCAACCGAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCG 360
Query 469 GATGGTGATGGAACCATC-AGTTTCCCTGAGTT-TGTGTGTGTAATGGCTGGGAAAATGA 526
|||||| | |||||||| | |||||| ||||| | || |||||||| |||||||||
Sbjct 361 GATGGTAACGGAACCATTGA-TTTCCCGGAGTTCT-TGAACCTAATGGCTAGGAAAATGA 418
Query 527 ----C--TGACTCTGAGGAAGAA 543
| ||||||||||||||||
Sbjct 419 AGGACACTGACTCTGAGGAAGAA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35716478517
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5