BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934930
Length=490
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-1714... 656 0.0
AT3G56800.1 | Symbols: CAM3, acam-3 | calmodulin 3 | chr3:21034... 597 3e-170
AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-1153... 475 1e-133
AT2G41090.1 | Symbols: | Calcium-binding EF-hand family protei... 387 7e-107
> AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-17141393
FORWARD LENGTH=837
Length=837
Score = 656 bits (355), Expect = 0.0
Identities = 381/393 (97%), Gaps = 3/393 (1%)
Strand=Plus/Plus
Query 96 GGTTGCATCACCACAAAGGAGCTCGGTACCGTGATGCGTTCCCTCGGTCAAAACCCGACC 155
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321
Query 156 GAAGCTGAGCTTCAGGACATGATCAACGAAGTGGATGCGGATGGTAACGGAACCATTGAT 215
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381
Query 216 TTCCCTGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 275
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 441
Query 276 CTCAAGGAAGCTTTCAGAGTCTTT-GACAAAGATCAGAACGGTTTCATCTCAGCTGCTGA 334
|||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 442 CTCAAGGAAGCTTTCAGAGT-TTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500
Query 335 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTAACTGATGAAGAAGTTGATGAGAT 394
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 501 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 560
Query 395 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTCAAGGT 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 561 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAGGT 620
Query 455 TATGATGGCCAAGTGAGGATTGGAAACAACTTC 487
||||||||| |||||||||||| ||||||||||
Sbjct 621 TATGATGGCTAAGTGAGGATTG-AAACAACTTC 652
Score = 152 bits (82), Expect = 3e-36
Identities = 97/104 (93%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 3 aaaaaaaaacaaaaaGCAATGGCGGATCAGCTCACTGACGATCAGATCTCAGAATTCAAG 62
|||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 133 AAAAGAAAAGAAAAAACAATGGCGGATCAGCTCACAGACGATCAGATCTCAGAATTCAAG 192
Query 63 GAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGT-TGCATCA 105
||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 193 GAAGCCTTCAGCTTATTCGACAAGGATGGTGATGGTATGCTTCA 236
> AT3G56800.1 | Symbols: CAM3, acam-3 | calmodulin 3 | chr3:21034537-21036077
REVERSE LENGTH=1051
Length=1051
Score = 597 bits (323), Expect = 3e-170
Identities = 414/459 (90%), Gaps = 2/459 (0%)
Strand=Plus/Plus
Query 13 aaaaaGCAATGGCGGATCAGCTCACTGACGATCAGATCTCAGAATTCAAGGAAGCTTTCA 72
||||| ||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 150 AAAAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAAGCTTTCA 209
Query 73 GCTTATTCGACAAGGATGGTGATGGTTGCATCACCACAAAGGAGCTCGGTACCGTGATGC 132
||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 210 GCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTGGGTACTGTGATGC 269
Query 133 GTTCCCTCGGTCAAAACCCGACCGAAGCTGAGCTTCAGGACATGATCAACGAAGTGGATG 192
||||||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 270 GTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGATCAACGAAGTGGATG 329
Query 193 CGGATGGTAACGGAACCATTGATTTCCCTGAGTTCTTGAACCTAATGGCTAGGAAAATGA 252
| ||||||||||| |||||||||||||| |||||||||||||| |||||| | || ||||
Sbjct 330 CTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTTATGGCTCGTAAGATGA 389
Query 253 AGGACACTGACTCTGAGGAAGAACTCAAGGAAGCTTTCAGAGTCTTT-GACAAAGATCAG 311
||||||| |||||||||||||| ||||||||||| ||| | || ||| ||||| || |||
Sbjct 390 AGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGT-TTTCGACAAGGACCAG 448
Query 312 AACGGTTTCATCTCAGCTGCTGAATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTA 371
||||||||||||||||| ||||| | | ||||||||||| ||||| || ||||||||
Sbjct 449 AACGGTTTCATCTCAGCAGCTGAGCTCCGCCATGTGATGACAAACCTTGGTGAGAAGCTT 508
Query 372 ACTGATGAAGAAGTTGATGAGATGATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATC 431
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 509 ACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGGTGATGGTCAGATT 568
Query 432 AACTACGAAGAGTTTGTCAAGGTTATGATGGCCAAGTGA 470
||||||||||||||||| ||||| |||||||| ||||||
Sbjct 569 AACTACGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGA 607
> AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-11534333
FORWARD LENGTH=768
Length=768
Score = 475 bits (257), Expect = 1e-133
Identities = 397/464 (86%), Gaps = 12/464 (3%)
Strand=Plus/Plus
Query 9 aaacaaaaaGCAATGGCGGATCAGCTCACTGACGATCAGATCTCAGAATTCAAGGAAGCT 68
|||| |||| |||||| ||||||||||| || ||||||||||| || ||||||||||||
Sbjct 56 AAACCAAAA--AATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCT 113
Query 69 TTCAG-CTTATTCGACAAGGATGGTGATGGTTGCATCACCAC-AAAGGAGCTCGGTACCG 126
|| || ||| |||||||| || || |||||||||||||| || ||| ||||| || || |
Sbjct 114 TTTAGCCTT-TTCGACAAAGACGGAGATGGTTGCATCACAACGAAA-GAGCTAGGAACAG 171
Query 127 TGATGCGTTCCCTCGGTCAAAACCCGACCGAAGCTGAGCTT-CAGGACATGATCAACGAA 185
||||| | || | |||||||| || || ||||| ||| || || || ||||| ||||||
Sbjct 172 TGATGAGATCATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAA 230
Query 186 GTGGATGCGGATGGTAACGGAACCATTGATTTCCCTGAG-TTCTTGAACCTAATGGCTAG 244
|| ||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||||||
Sbjct 231 GTAGATGCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTC-TGAACCTAATGGCTAG 289
Query 245 GAAAATGAAGGACACTGACTCTGAGGAAGAACTCAAGGAAGCTTTCAGAGTCTTT-GACA 303
||| |||||||||||||||||||| ||||| ||||| ||||||||||| || ||| || |
Sbjct 290 GAAGATGAAGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGT-TTTCGATA 348
Query 304 AAGATCAGAACGGTTTCATCTCAGCTGCTGAATTGAGACATGTGATGACTAACCTCGGCG 363
| || ||||||||||||||||| || ||||| || |||||||| ||||| || || || |
Sbjct 349 AGGACCAGAACGGTTTCATCTCGGCAGCTGAGTTAAGACATGTAATGACAAATCTTGGTG 408
Query 364 AGAAGCTAACTGATGAAGAAGTTGATGAGATGATTAAGGAAGCTGATGTTGATGGTGATG 423
||||| |||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 409 AGAAGTTAACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATG 468
Query 424 GTCAGATCAACTACGAAGAGTTTGTCAAGGTTATGATGGCCAAG 467
|||||||||| || |||||||||||||| ||||||||||| |||
Sbjct 469 GTCAGATCAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
> AT2G41090.1 | Symbols: | Calcium-binding EF-hand family protein
| chr2:17135721-17136852 FORWARD LENGTH=912
Length=912
Score = 387 bits (209), Expect = 7e-107
Identities = 387/469 (83%), Gaps = 27/469 (6%)
Strand=Plus/Plus
Query 8 aaaacaaaaaGCAATGGCGGATCAGCTCACT-GACGATCAGATCTCAGAATTCAAGGAAG 66
|||| ||||| |||||||| || || ||||| ||| | ||||| ||||| || | ||||
Sbjct 90 AAAATAAAAAACAATGGCGAATAAGTTCACTAGAC-AACAGATTTCAGAGTTTAGGGAA- 147
Query 67 C-TTTCAGCTTATTCGACAAGGATGGTGATGGTTGCATCACCACAAAGGAGCTCGGTACC 125
| |||||| ||| ||||||| ||||||||||| ||| |||||| ||||| ||||| ||
Sbjct 148 CAGTTCAGCGTATACGACAAGAATGGTGATGGTCACATTACCACAGAGGAGTTCGGTGCC 207
Query 126 GTGATGCGTTCCCTCGGTCAAAACCCGACCGAAGCTGAGCTTCAGGA-CATGATCAACGA 184
|||||||||||||||||| ||||| |||| |||||||||||||||| | ||||||||
Sbjct 208 GTGATGCGTTCCCTCGGTTTAAACCTGACCCAAGCTGAGCTTCAGGAGGA-GATCAACG- 265
Query 185 AGT-GGATGCGGATGGTAACGGAACCATTGATTTCCCTGAGTTCTTGAAC-CTAATGGCT 242
| | |||| |||||| |||||||||| ||||| ||||||||||| | | ||||||
Sbjct 266 ATTCGGATTTAGATGGTGACGGAACCATCAATTTCACTGAGTTCTTGTGCGC-AATGGC- 323
Query 243 AGGAAAATGAAGGACACTGACTCTGAGGAAGAACTCAAGGAAGCTTTCAGAGTCTTTGAC 302
| ||||||||| |||||||| |||| |||||| ||| ||||||| ||||||||
Sbjct 324 -------T-AAGGACACTTACTCTGAGAAAGACCTCAAGAAAGATTTCAGACTCTTTGAC 375
Query 303 AAAGATC-AGAACGGTTTCATCTCAGCTGCTGAATTGAGACATGTGATGACTAACCT-CG 360
| ||| | |||| ||||||||||||||||||||| ||||| |||||| ||||| ||| ||
Sbjct 376 ATAGA-CAAGAATGGTTTCATCTCAGCTGCTGAAATGAGATATGTGAGGACTATCCTCCG 434
Query 361 GCGAGAAGCTAACTGATGAAGAAGTTGATGAGATGATTAAGGAAGCTGATGTTGATGGTG 420
| | ||||| ||||||||||||| | |||||||| || |||| |||||||||||||||||
Sbjct 435 GTG-GAAGCAAACTGATGAAGAAATCGATGAGATTATCAAGGCAGCTGATGTTGATGGTG 493
Query 421 ATGGTCAGATCAACTAC-GAAGAGTTTGTCAAGG-TTATGATGGCCAAG 467
||||||||||||||||| || ||||||| || || ||||||||||||||
Sbjct 494 ATGGTCAGATCAACTACAGA-GAGTTTGCCA-GGCTTATGATGGCCAAG 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23358878355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5