BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934932 Length=802 Score E Sequences producing significant alignments: (Bits) Value AT2G41130.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1338 0.0 > AT2G41130.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17143294-17144949 FORWARD LENGTH=1091 Length=1091 Score = 1338 bits (724), Expect = 0.0 Identities = 777/803 (97%), Gaps = 2/803 (0%) Strand=Plus/Plus Query 1 GGCGGCGCAAACAAAAGATAATGCAACCAGAGACCTCAGATCAGATGTTGTATTCGTTTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 47 GGCGGCGCAAACAAAAGATAATGCAACCAGAGACCTCAGATCAGATGTTGTACTCGTTTC 106 Query 61 TCGCCGGAAACGAAGTCGGCGGTGGAGGGTACTGCGTCTCCGGCGACTACATGACGACTA 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 TTGCCGGAAACGAAGTCGGCGGTGGAGGGTACTGCGTCTCCGGCGACTACATGACGACTA 166 Query 121 TGCAGAGCTTATGTGGGTCTTCTTCGTCGACTTCATCGTATTACCCACTGGCGATCTCCG 180 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 167 TGCAGAGCTTATGTGGGTCTTCGTCGTCGACGTCATCGTATTACCCACTGGCGATCTCCG 226 Query 181 GCATCGGAGAAACGATGGCTCAAGACAGAGCTATT-GCTGCTTTGAGAAATCACAaagaa 239 |||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 227 GCATCGGAGAAACGATGGCTCAAGACAGAGCT-TTAGCTGCTTTGAGGAACCACAAAGAA 285 Query 240 gctgagagaagaagaagagagagGATCAATTCTCATCTCAACAAGCTTCGTAACGTACTC 299 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 GCTGAGAGAAGAAGGAGAGAGAGGATCAATTCTCATCTCAACAAGCTTCGTAACGTACTC 345 Query 300 TCTTGTAATTCTAAGACCGATAAAGCCACACTGCTTGCCAAAGTAGTTCAACGAGTCAAA 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 346 TCTTGTAATTCTAAGACCGATAAAGCCACACTGCTCGCCAAAGTAGTTCAACGAGTCAGA 405 Query 360 GAACTTAAACAGCAAACCCTAGAGATCTCCGACTCCGACCAAACACTATTACCATCAGAG 419 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 406 GAACTTAAACAGCAAACCCTAGAGACCTCCGACTCCGACCAAACATTATTACCATCAGAG 465 Query 420 ACCGACGAGATTAGCGTTCTACACTTTGGAGACTATTCAAACGACGGTCATATAATTTTC 479 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 466 ACCGACGAAATTAGTGTTCTACACTTTGGAGACTATTCAAACGACGGTCATATAATCTTC 525 Query 480 AAAGCCTCTCTATGTTGTGACGATAGATCAGATCTCTTGCCGGACCTTATGGAGATTCTC 539 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 526 AAAGCCTCTCTATGTTGTGAAGATAGATCAGATCTCTTGCCGGACCTTATGGAGATTCTC 585 Query 540 AAGTCTCTTAACATGAAGACTCTCCGAGCTGAGATGGTAACCCTTGGGGGTCGGACAAGA 599 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 586 AAGTCTCTTAACATGAAGACTCTCCGAGCTGAGATGGTAACCATTGGTGGTCGGACAAGA 645 Query 600 AGTGTTCTTGTCGTAGCTGCTGACAAAGAGATGCACGGCGTCGAGTCTGTGCATTTCTTG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 646 AGTGTTCTTGTCGTAGCTGCTGACAAAGAGATGCACGGCGTCGAGTCTGTGCATTTTTTG 705 Query 660 CAAAACGCTCTCAAGTCTCTGCTTGAGCGGTCAAGCAAGTCATTGATGGAACGTAGTTCT 719 ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 706 CAAAATGCTCTCAAGTCGCTGCTTGAGCGGTCAAGCAAGTCGTTGATGGAACGTAGTTCT 765 Query 720 GGTGGTGGAGGAGGAGAACGGTCAAAGCGGCGCCGTGCGCTGGATCACATCATAATGGTG 779 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 766 GGTGGTGGAGGAGGAGAACGGTCAAAGCGGCGTCGTGCGCTGGATCACATCATAATGGTG 825 Query 780 TGAAATGATGAGATTTGAGTACA 802 ||||||||||||| ||||| ||| Sbjct 826 TGAAATGATGAGAATTGAGCACA 848 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39031932219 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5