BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934932
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41130.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1338 0.0
> AT2G41130.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17143294-17144949 FORWARD
LENGTH=1091
Length=1091
Score = 1338 bits (724), Expect = 0.0
Identities = 777/803 (97%), Gaps = 2/803 (0%)
Strand=Plus/Plus
Query 1 GGCGGCGCAAACAAAAGATAATGCAACCAGAGACCTCAGATCAGATGTTGTATTCGTTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 47 GGCGGCGCAAACAAAAGATAATGCAACCAGAGACCTCAGATCAGATGTTGTACTCGTTTC 106
Query 61 TCGCCGGAAACGAAGTCGGCGGTGGAGGGTACTGCGTCTCCGGCGACTACATGACGACTA 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TTGCCGGAAACGAAGTCGGCGGTGGAGGGTACTGCGTCTCCGGCGACTACATGACGACTA 166
Query 121 TGCAGAGCTTATGTGGGTCTTCTTCGTCGACTTCATCGTATTACCCACTGGCGATCTCCG 180
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 167 TGCAGAGCTTATGTGGGTCTTCGTCGTCGACGTCATCGTATTACCCACTGGCGATCTCCG 226
Query 181 GCATCGGAGAAACGATGGCTCAAGACAGAGCTATT-GCTGCTTTGAGAAATCACAaagaa 239
|||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 227 GCATCGGAGAAACGATGGCTCAAGACAGAGCT-TTAGCTGCTTTGAGGAACCACAAAGAA 285
Query 240 gctgagagaagaagaagagagagGATCAATTCTCATCTCAACAAGCTTCGTAACGTACTC 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GCTGAGAGAAGAAGGAGAGAGAGGATCAATTCTCATCTCAACAAGCTTCGTAACGTACTC 345
Query 300 TCTTGTAATTCTAAGACCGATAAAGCCACACTGCTTGCCAAAGTAGTTCAACGAGTCAAA 359
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 346 TCTTGTAATTCTAAGACCGATAAAGCCACACTGCTCGCCAAAGTAGTTCAACGAGTCAGA 405
Query 360 GAACTTAAACAGCAAACCCTAGAGATCTCCGACTCCGACCAAACACTATTACCATCAGAG 419
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 406 GAACTTAAACAGCAAACCCTAGAGACCTCCGACTCCGACCAAACATTATTACCATCAGAG 465
Query 420 ACCGACGAGATTAGCGTTCTACACTTTGGAGACTATTCAAACGACGGTCATATAATTTTC 479
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 466 ACCGACGAAATTAGTGTTCTACACTTTGGAGACTATTCAAACGACGGTCATATAATCTTC 525
Query 480 AAAGCCTCTCTATGTTGTGACGATAGATCAGATCTCTTGCCGGACCTTATGGAGATTCTC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 526 AAAGCCTCTCTATGTTGTGAAGATAGATCAGATCTCTTGCCGGACCTTATGGAGATTCTC 585
Query 540 AAGTCTCTTAACATGAAGACTCTCCGAGCTGAGATGGTAACCCTTGGGGGTCGGACAAGA 599
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 586 AAGTCTCTTAACATGAAGACTCTCCGAGCTGAGATGGTAACCATTGGTGGTCGGACAAGA 645
Query 600 AGTGTTCTTGTCGTAGCTGCTGACAAAGAGATGCACGGCGTCGAGTCTGTGCATTTCTTG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 646 AGTGTTCTTGTCGTAGCTGCTGACAAAGAGATGCACGGCGTCGAGTCTGTGCATTTTTTG 705
Query 660 CAAAACGCTCTCAAGTCTCTGCTTGAGCGGTCAAGCAAGTCATTGATGGAACGTAGTTCT 719
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 706 CAAAATGCTCTCAAGTCGCTGCTTGAGCGGTCAAGCAAGTCGTTGATGGAACGTAGTTCT 765
Query 720 GGTGGTGGAGGAGGAGAACGGTCAAAGCGGCGCCGTGCGCTGGATCACATCATAATGGTG 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 766 GGTGGTGGAGGAGGAGAACGGTCAAAGCGGCGTCGTGCGCTGGATCACATCATAATGGTG 825
Query 780 TGAAATGATGAGATTTGAGTACA 802
||||||||||||| ||||| |||
Sbjct 826 TGAAATGATGAGAATTGAGCACA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5