BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934943

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41230.1 | Symbols:  | unknown protein; Has 75 Blast hits to...   505    1e-142
  AT2G41231.1 | Symbols:  | unknown protein. | chr2:17195292-1719...   337    4e-92 


> AT2G41230.1 | Symbols:  | unknown protein; Has 75 Blast hits 
to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:17194926-17195674 REVERSE 
LENGTH=749
Length=749

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 285/291 (98%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  12   TAATGGAAAATGAGGGTTCATGATCAACGGCTGAGATTTGATGTCACACCAAAGCCAATG  71
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  41   TAATGGAAAATGAGGGTTCATGATCAACGGCTGAGATTTGATGTCACACCCAAGCCGATG  100

Query  72   GGTTTGACCGGAAGTTCTTTAATCACGGCAAGATCCGTCGCActtcttctctttctctct  131
            ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  101  GGTTTGAACGGAAGTTCTTTGATCACGGCAAGATCCGTCGCACTTCTTCTCTTTCTCTCT  160

Query  132  ctgcttcttctgattctGCCACCGTTCCTGCCGCCGCTTCCACCGCCTCCGGCGACActc  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  161  CTGCTTCTTCTGATTCTGCCACCGTTCCTGCCGCCGCTTCCACCGCCTCCGGCGACACTC  220

Query  192  ctcctccttcctcttctcctcatgattctcctcattttcttggctttttctccttctAAT  251
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  221  CTCCTCCTTCCTCTACTCCTCATGATTCTCCTCATTTTCTTGGCTTTTTCTCCTTCTAAT  280

Query  252  GAGCCCAGCCTCGCCGTGGAACCTCTCGACCCCTGATGTCGGCGACTTGCG  302
            ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  281  GAGCCCAGCCTCGCCGTTGAACCTCTCGACCCCTGATGTCGGCGACTTGCG  331


> AT2G41231.1 | Symbols:  | unknown protein. | chr2:17195292-17195915 
FORWARD LENGTH=335
Length=335

 Score =  337 bits (182),  Expect = 4e-92
 Identities = 186/188 (99%), Gaps = 0/188 (0%)
 Strand=Plus/Minus

Query  115  ttcttctctttctctctctgcttcttctgattctGCCACCGTTCCTGCCGCCGCTTCCAC  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TTCTTCTCTTTCTCTCTCTGCTTCTTCTGATTCTGCCACCGTTCCTGCCGCCGCTTCCAC  181

Query  175  CGCCTCCGGCGACActcctcctccttcctcttctcctcatgattctcctcattttcttgg  234
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  180  CGCCTCCGGCGACACTCCTCCTCCTTCCTCTACTCCTCATGATTCTCCTCATTTTCTTGG  121

Query  235  ctttttctccttctAATGAGCCCAGCCTCGCCGTGGAACCTCTCGACCCCTGATGTCGGC  294
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  120  CTTTTTCTCCTTCTAATGAGCCCAGCCTCGCCGTTGAACCTCTCGACCCCTGATGTCGGC  61

Query  295  GACTTGCG  302
            ||||||||
Sbjct  60   GACTTGCG  53



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14276040716


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5