BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934945
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41250.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1365 0.0
> AT2G41250.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:17200659-17202618 REVERSE
LENGTH=1143
Length=1143
Score = 1365 bits (739), Expect = 0.0
Identities = 865/922 (94%), Gaps = 23/922 (2%)
Strand=Plus/Plus
Query 1 TCAATC--ACAGAGAGAAGCTAATGGCGTTGTTAAGAATCAGGAAGGCGACGACGACACT 58
|||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 47 TCAATCATACAGA-AGCAGCTAATGGCGTTG---AGAATCAGGAAGGCGACGACGACACT 102
Query 59 TCTCTAT-TCCGGT--G---------GG-ACGGATCGGATCGCGAGAACCGGAGCATTGC 105
||||| | |||||| | || |||||||||||||||||||||||||||||||
Sbjct 103 TCTCT-TCTCCGGTGGGATTACTCATGGAACGGATCGGATCGCGAGAACCGGAGCATTGC 161
Query 106 TGAGCCGTTGGATCTCCTCCGCTTCGTCATCTTCCGCTGTTGTGGCGGAGGATGAATCTG 165
| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 162 TCAGCCGTTGGATCTCCTCTGCTTCGTCATCTTCCGCTGTTGTAGCGGATGATGAATCTA 221
Query 166 GTGGGATTTACGGATTGGGAAGTGTATTGAAGGAGTATGAAGATTATAGGAGATCTCTCT 225
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 222 GTGGGATTTACGGATTGGGAAGTGTGTTGAAAGAGTATGAAGATTATAGGAGATCTCTCT 281
Query 226 ACGGTGAGATCACTCATAAGGCGTTGCTTGTTGATGCTGTTGGTACTCTCCTTGTTCCCG 285
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 282 ATGGTGAGATCACTCATAAGGCTTTGCTTGTTGATGCTGTTGGTACTCTCCTTGTTCCCG 341
Query 286 CTCAACCTACGGCTCAGATATACAAGAATATTGGTGAGAAGTACGGGGTCGAGTACTCGG 345
|||||||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct 342 CTCAACCTACTGCTCAGATATATAAGAATATTGGAGAGAAGTACGGAGTGGAGTACTCGG 401
Query 346 AGGCTGAGATACTTACTAGATACAGAAGAGCTTATCAGAAACCATGGGGCGGATCTCATC 405
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 402 AGGCTGAGATACTTACTAGATACAGAAGAGCTTATCAGAAACCATGGGGTGGATCTCATC 461
Query 406 TTAGATATGTCAACGATGCGAGACCTTTCTGGCAGTATATAGTGACTGCATCAACAGGCT 465
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTAGATATGTAAACGATGCAAGACCTTTCTGGCAGTATATAGTGACTGCATCAACAGGCT 521
Query 466 GCTCGGATTCTCAGTACTTTGAAGAGCTTTACAGTTATTTTACTACAGAACAGGCGTGGA 525
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 522 GCTCGGATTCACAGTACTTTGAAGAGCTTTACAGCTATTTTACTACAGAACAGGCGTGGA 581
Query 526 AGTTATGTGATCCAGATGCAGGGAGAGTGTTTAAGGCTATTAAAGAAGCGGGTGTGAAAG 585
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 582 AGTTATGTGATCCAGATGCAGGGAAAGTGTTTAAGGCTATTAAAGAAGCGGGTGTAAAAG 641
Query 586 TTGCAATTGTGTCCAACTTCGATACTCGGTTAAGACCACTCCTACGTGCACTGAGATGTG 645
||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 642 TTGCAATAGTCTCCAACTTCGATACTCGGTTAAGACCTCTCCTACGTGCATTGAGATGTG 701
Query 646 AAGACTGGTTTGATGCTGTAGCTGTTTCAGCAGAAGTTGAAGCGGAGAAACCAAACCCGA 705
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 702 AAGATTGGTTTGATGCTGTAGCTGTTTCAGCAGAAGTTGAAGCGGAAAAACCAAACCCGA 761
Query 706 CTATCTTCTTGAAAGCTTGTGAGTTATTAGAAGTGAATCCTGAGGATGCGGTTCATGTAG 765
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 762 CTATCTTCTTAAAAGCTTGTGAGTTATTAGAAGTGAATCCCGAGGATGCGGTTCATGTAG 821
Query 766 GAGATGACCGTAGGAATGATGTATGGGGAGCTAGAGACGCAGGCTGTGACGCTTGGCTCT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GAGATGACCGTAGGAATGATGTATGGGGAGCTAGAGACGCAGGCTGTGACGCTTGGCTCT 881
Query 826 GGGGAAGTGAAGTTACTTCGTTCAAACAGGTTGCTCAACGGATAGGAGTGAAGGGCTGAA 885
|||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||
Sbjct 882 GGGGAAGTGAAGTTACGTCATTTAAACAGGTTGCTCAACGGATAGGAGTGAAGGTCTGAA 941
Query 886 GCAAA-GCAT--GAGAGAAATG 904
||||| |||| ||||||||||
Sbjct 942 GCAAAAGCATATGAGAGAAATG 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5