BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934948
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41260.2 | Symbols: M17, ATM17 | glycine-rich protein / late... 1110 0.0
AT2G41280.1 | Symbols: M10, ATM10 | late embryogenesis abundant... 233 2e-60
> AT2G41260.2 | Symbols: M17, ATM17 | glycine-rich protein / late
embryogenesis abundant protein (M17) | chr2:17206510-17207698
FORWARD LENGTH=1080
Length=1080
Score = 1110 bits (601), Expect = 0.0
Identities = 803/894 (90%), Gaps = 39/894 (4%)
Strand=Plus/Plus
Query 1 TGTTTTGTGTAACGAAAACAAAATATGAGAAACCTCAAGTCCCTCGTTCTCTTGGCTTTG 60
||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 8 TGTTTTGTGTAACTAAAACAAAATATGGGAAACCTCAAGTCTCTCGTTCTCTTGGCTTTG 67
Query 61 CTCTTTTCTTTCTCCCTCGCTGTTTTTGCGAACACATCCAACGATGCCACACATGTTAAA 120
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 68 CTCTTTTCTTTCTCCGTCGCTGTTTTCGCGAACACATCCAACGATGCCACAC------AC 121
Query 121 GATGAAGTGAAGCCAAGTACTGAAGCAACCGATGCTATAGAGCCGCAAAAACGTGAAGGT 180
|||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||| |||
Sbjct 122 GATGAAGTGAAGCCAAGTACTGAAGCAACCCATGCCATAGAGGCGCAAAAACATGACGGT 181
Query 181 AAACCCCAGATCGAGGGAGCCGAAGTCGAGGCCAATGACGCTGTTGTAGAGCCCCAGCAA 240
||||||||||||| || |||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 182 AAACCCCAGATCGCGGAAGCCCAAGTTGAGGCCAATGACCCTGTTGTAGAGCCCCAGCAA 241
Query 241 GGCTGGGGT-G--GTGGTGGTTGTAGTTACGGATGTTGCGGTGGGTGGTGGTATGGACGG 297
| ||||||| | ||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 242 GACTGGGGTGGCCGTGGTGGTTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGG 301
Query 298 TGCAGATACTGTTGCAGGAGTCCAGCCGAGGCCAACGAAGTTGTGAAAACTGTTGAGCCC 357
|||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||
Sbjct 302 TGCAGATACTGTTGCAGGAGTCAAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCC 361
Query 358 AACGATGTTGAGCCTCAGCAGGGTGGCC------GTGGCGGTGATGGCGGCGGTGGCCGT 411
|||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||
Sbjct 362 AACGATGTTGAGCCTCAGCAGGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGAGGCCGT 421
Query 412 GGTGGTTGTAGGTACGGATGTTGCGGTGGCTGGTGGCGTGGGCGGTGCAGATACTGTTGC 471
||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 422 GGTGGTTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGC 481
Query 472 AGGACTCAAGCCGAGGCCAGCGAAGTTGTTGAAACTGTTGAGCCCAACGATGTAGAGCCT 531
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 482 AGGAGTCAAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGTTGAGCCT 541
Query 532 CAGCAGGGTGGCC---gtggtggc---ggtggcggc-gatggccgtggtggttgtaggta 584
||||||||||||| |||||||| ||||| ||| || |||||||||||||||||||
Sbjct 542 CAGCAGGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGA-GGCCGTGGTGGTTGTAGGTG 600
Query 585 cggatgttgcggtgggtggtggcgTGGGCGGTGCAGATACTGTTGCAGGACTCAAGCCGA 644
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 601 GGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTCAAGCCGA 660
Query 645 GGCCAGCGAAGTTGTTGAAACTGTTGAGCCCAACGATGTTGAGCCTCAGCAGggtggtcg 704
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 GGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGTTGAGCCTCAGCAGGGTGGCCG 720
Query 705 tgg------cgg---------cggtggccgtggtggttgtaggtacggatgttgtggtgg 749
||| ||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 721 TGGTGGTGGCGGTGGTGGTGGCGGTGGCCGTGGTGGTTGTAGGTGGGGATGTTGCGGTGG 780
Query 750 gtggtggcgtggacggtgCAGATATTGTTGCAGGACTCAAGCCGAGGCAAACGAGGTTGT 809
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 781 GTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTCAAGCCGAGGCAAACGAGGTTGT 840
Query 810 GGAAACTGTTGAGGCCCAACAAGCTAAGCCATAAATTGGCGTGTAACACAAACT 863
|||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 841 GGAAACTGTTGAGGCCCAACAAGCTAAGCCATGAATTG-CGTGTAATACAAACT 893
Score = 564 bits (305), Expect = 5e-160
Identities = 398/441 (90%), Gaps = 13/441 (3%)
Strand=Plus/Plus
Query 251 GTGGTGGTTGTAGTTACGGATGTTGCGGTGGGTGGTGGTATGGACGGTGCAGATACTGTT 310
||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GTGGTGGTTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTT 479
Query 311 GCAGGAGTCCAGCCGAGGCCAACGAAGTTGTGAAAACTGTTGAGCCCAACGATGTTGAGC 370
||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 480 GCAGGAGTCAAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGTTGAGC 539
Query 371 CTCAGCAGGGTGGCCGTGG------CGGTGATGGCGGCGGTGGCCGTGGTGGTTGTAGGT 424
||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct 540 CTCAGCAGGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGAGGCCGTGGTGGTTGTAGGT 599
Query 425 ACGGATGTTGCGGTGGCTGGTGGCGTGGGCGGTGCAGATACTGTTGCAGGACTCAAGCCG 484
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 600 GGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTCAAGCCG 659
Query 485 AGGCCAGCGAAGTTGTTGAAACTGTTGAGCCCAACGATGTAGAGCCTCAGCAGGGTGGCC 544
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 AGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGTTGAGCCTCAGCAGGGTGGCC 719
Query 545 gtggtgg---cggtggcgg---cgatggccgtggtggttgtaggtacggatgttgcggtg 598
||||||| |||||| || || |||||||||||||||||||| |||||||||||||
Sbjct 720 GTGGTGGTGGCGGTGGTGGTGGCGGTGGCCGTGGTGGTTGTAGGTGGGGATGTTGCGGTG 779
Query 599 ggtggtggcgTGGGCGGTGCAGATACTGTTGCAGGACTCAAGCCGAGGCCAGCGAAGTTG 658
||||||||||||| |||||||||||||||||||||| |||||||||||| | ||| ||||
Sbjct 780 GGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTCAAGCCGAGGCAAACGAGGTTG 839
Query 659 TTGAAACTGTTGAG-CCCAAC 678
| |||||||||||| ||||||
Sbjct 840 TGGAAACTGTTGAGGCCCAAC 860
Score = 542 bits (293), Expect = 3e-153
Identities = 401/449 (89%), Gaps = 24/449 (5%)
Strand=Plus/Plus
Query 403 GGTGGCCGTGGTGGTTGTAGGTACGGATGTTGCGGTGGCTGGTGGCGTGGGCGGTGCAGA 462
|||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 248 GGTGGCCGTGGTGGTTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGA 307
Query 463 TACTGTTGCAGGACTCAAGCCGAGGCCAGCGAAGTTGTTGAAACTGTTGAGCCCAACGAT 522
||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 308 TACTGTTGCAGGAGTCAAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGAT 367
Query 523 GTAGAGCCTCAGCAGGGTGGCC---gtggtggc---ggtggcggc-gatggccgtggtgg 575
|| ||||||||||||||||||| |||||||| ||||| ||| || |||||||||||
Sbjct 368 GTTGAGCCTCAGCAGGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGA-GGCCGTGGTGG 426
Query 576 ttgtaggtacggatgttgcggtgggtggtggcgTGGGCGGTGCAGATACTGTTGCAGGAC 635
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 427 TTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAG 486
Query 636 TCAAGCCGAGGCCAGCGAAGTTGTTGAAACTGTTGAGCCCAACGATGTTGAGCCTCAGCA 695
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 487 TCAAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGTTGAGCCTCAGCA 546
Query 696 Gggtggtcgtggcgg---cggtgg------c-----c-gtggtggttgtaggtacggatg 740
|||||| ||||| || |||||| | | ||||||||||||||| |||||
Sbjct 547 GGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGAGGCCGTGGTGGTTGTAGGTGGGGATG 606
Query 741 ttgtggtgggtggtggcgtggacggtgCAGATATTGTTGCAGGACTCAAGCCGAGGCAAA 800
||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 607 TTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTCAAGCCGAGGCCAG 666
Query 801 CGAGGTTGTGGAAACTGTTGAGGCCCAAC 829
|||||||||||||||||||||| ||||||
Sbjct 667 CGAGGTTGTGGAAACTGTTGAG-CCCAAC 694
Score = 353 bits (191), Expect = 1e-96
Identities = 249/276 (90%), Gaps = 7/276 (3%)
Strand=Plus/Plus
Query 251 GTGGTGGTTGTAGTTACGGATGTTGCGGTGGGTGGTGGTATGGACGGTGCAGATACTGTT 310
||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 585 GTGGTGGTTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTT 644
Query 311 GCAGGAGTCCAGCCGAGGCCAACGAAGTTGTGAAAACTGTTGAGCCCAACGATGTTGAGC 370
||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 645 GCAGGAGTCAAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGTTGAGC 704
Query 371 CTCAGCAGGGTGGCCGTGG------CGGTGATGGCGGCGGTGGCCGTGGTGGTTGTAGGT 424
||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 705 CTCAGCAGGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGTGGCCGTGGTGGTTGTAGGT 764
Query 425 ACGGATGTTGCGGTGGCTGGTGGCGTGGGCGGTGCAGATACTGTTGCAGGACTCAAGCCG 484
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 765 GGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTCAAGCCG 824
Query 485 AGGCCAGCGAAGTTGTTGAAACTGTTGAG-CCCAAC 519
|||| | ||| ||||| |||||||||||| ||||||
Sbjct 825 AGGCAAACGAGGTTGTGGAAACTGTTGAGGCCCAAC 860
Score = 333 bits (180), Expect = 2e-90
Identities = 250/281 (89%), Gaps = 16/281 (6%)
Strand=Plus/Plus
Query 564 tggccgtggtggttgtaggtacggatgttgcggtgggtggtggcgTGGGCGGTGCAGATA 623
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 250 TGGCCGTGGTGGTTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATA 309
Query 624 CTGTTGCAGGACTCAAGCCGAGGCCAGCGAAGTTGTTGAAACTGTTGAGCCCAACGATGT 683
||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 310 CTGTTGCAGGAGTCAAGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAGCCCAACGATGT 369
Query 684 TGAGCCTCAGCAGggtggtcgtggcgg---cggtgg------c-----c-gtggtggttg 728
|||||||||||||||||| ||||| || |||||| | | ||||||||||
Sbjct 370 TGAGCCTCAGCAGGGTGGCCGTGGTGGTGGCGGTGGTGGTGGCGGAGGCCGTGGTGGTTG 429
Query 729 taggtacggatgttgtggtgggtggtggcgtggacggtgCAGATATTGTTGCAGGACTCA 788
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 430 TAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTTGCAGGAGTCA 489
Query 789 AGCCGAGGCAAACGAGGTTGTGGAAACTGTTGAGGCCCAAC 829
||||||||| | |||||||||||||||||||||| ||||||
Sbjct 490 AGCCGAGGCCAGCGAGGTTGTGGAAACTGTTGAG-CCCAAC 529
Score = 148 bits (80), Expect = 7e-35
Identities = 101/111 (91%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 251 GTGGTGGTTGTAGTTACGGATGTTGCGGTGGGTGGTGGTATGGACGGTGCAGATACTGTT 310
||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 750 GTGGTGGTTGTAGGTGGGGATGTTGCGGTGGGTGGTGGCGTGGACGGTGCAGATACTGTT 809
Query 311 GCAGGAGTCCAGCCGAGGCCAACGAAGTTGTGAAAACTGTTGAG-CCCAAC 360
||||||||| ||||||||| ||||| |||||| ||||||||||| ||||||
Sbjct 810 GCAGGAGTCAAGCCGAGGCAAACGAGGTTGTGGAAACTGTTGAGGCCCAAC 860
> AT2G41280.1 | Symbols: M10, ATM10 | late embryogenesis abundant
protein (M10) / LEA protein M10 | chr2:17209697-17210423
FORWARD LENGTH=602
Length=602
Score = 233 bits (126), Expect = 2e-60
Identities = 153/166 (92%), Gaps = 1/166 (1%)
Strand=Plus/Plus
Query 1 TGTTTTGTGTAACGAAAACAAAATATGAGAAACCTCAAGTCCCTCGTTCTCTTGGCTTTG 60
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| ||||||||
Sbjct 43 TGTTTTGTGTAACGAAAACAAAAAATGGGAAACCTCATGTCTCTCGTTCTCGTGGCTTTG 102
Query 61 CTCTTTTCTTTCTCCCTCGCTGTTTTTGCGAACACATCCAACGATGCCACACATGTTAAA 120
||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 103 CTCTTTTCTCTCTCCCTTGCTGTTATTGCGGACACATCCAACGATGCCACACATGTTAAA 162
Query 121 GATGAAGTGAAGCCAAGTACTGAAGCAACCGATGCTATAGA-GCCG 165
|| ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 163 GAAGAAGTGAAGCCGAGTACTGAAGCAACTGATGCTATAGAAGCCG 208
Score = 207 bits (112), Expect = 1e-52
Identities = 147/163 (90%), Gaps = 5/163 (3%)
Strand=Plus/Plus
Query 198 AGCCGAAGTCGAGGCCAATGACGCTGTTGTAGAGCCCCAGCAAGGCTGGGGTGGTGGTGG 257
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 204 AGCCGAAGTCGAGGTCAATGACGCTGTTGTAGAGCCCCAGCAAGGCTTGCCTGGTGGTGG 263
Query 258 TTGTAG-TTACGGATGTTGCGGTGGGT---GGTGGTATGGACGGTGCAGATACTGTTGCA 313
|||||| || ||||||||||||||||| ||||| |||||| ||||| ||||||||||
Sbjct 264 TTGTAGGTT-CGGATGTTGCGGTGGGTACTGGTGGAATGGACTGTGCATATACTGTTGCC 322
Query 314 GGAGTCCAGCCGAGGCCAACGAAGTTGTGAAAACTGTTGAGCC 356
| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 323 GCAGTCAAGCCGAGGCCAACGAAGTTGTAAAAACTGTTGAGCC 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5