BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934955

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41312.1 | Symbols:  | other RNA | chr2:17225542-17226693 FO...   231    2e-60


> AT2G41312.1 | Symbols:  | other RNA | chr2:17225542-17226693 
FORWARD LENGTH=604
Length=604

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 147/157 (94%), Gaps = 3/157 (2%)
 Strand=Plus/Plus

Query  5    GAGAGAGACAGAGATAATGGCGATGCCTTTGGAAATGGCGATGCTTCTGACGAATACGGT  64
            |||||||  |||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct  46   GAGAGAGTGAGAGATTATGGCGATGCCTTTGGAAATGGCGATGCTTTTGACGAAAACGGT  105

Query  65   GTGGTTTGCTCTGAGCGGCTGGATTTTAACATGTTTGTCTATCGCCGACGAGATTGCTGG  124
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  106  TTGGTTTGCTCTGAGCGGCTGGATTTTAACATGTTTGTCCATCGCCGACGAGATTGCTGG  165

Query  125  TTCACTCAGAAACCGAGAAGTTG-T--TCCTTTACAT  158
            ||||||||||||||||||||||| |  ||||||||||
Sbjct  166  TTCACTCAGAAACCGAGAAGTTGGTCCTCCTTTACAT  202



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5