BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934956
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41330.1 | Symbols: | Glutaredoxin family protein | chr2:17... 1504 0.0
AT3G57070.1 | Symbols: | Glutaredoxin family protein | chr3:21... 357 1e-97
> AT2G41330.1 | Symbols: | Glutaredoxin family protein | chr2:17226948-17228378
FORWARD LENGTH=1431
Length=1431
Score = 1504 bits (814), Expect = 0.0
Identities = 1133/1276 (89%), Gaps = 66/1276 (5%)
Strand=Plus/Plus
Query 1 TCTGTTCTGCTTCGAAAATTATGGGTTCCTCTGTTTCTAAAACCG----CT-T-C-T-T- 51
|||||||||||||| |||||||||||||||||||||||||||||| || | | | |
Sbjct 101 TCTGTTCTGCTTCG-AAATTATGGGTTCCTCTGTTTCTAAAACCGCTTCCTCTGCTTCTG 159
Query 52 CATCTTC--T----TCG---TTGAATTTACCTCCGGAGACGGAATTCAACATCCCGTCTT 102
| ||||| | ||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 160 CTTCTTCTATAACATCGATTTTGAATTCACCTCCGGAGACGGAATTCAACATCCCTTCTT 219
Query 103 CGTCTGTCCCTAAGGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCGGTTAAAA 162
| || || ||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 220 CATCGGTACCTAAAGCTTTCACATTTCCGATGCCGTCGATTCATCATCCACCTGCTAAAA 279
Query 163 AAGGCGACACGCACCACTTCGTCTCTCTTACATCGACCACTTACGGCTCTCTTCTCCTCG 222
|||||||||| |||||||| |||||||||||||||||||||||||| |||||| | ||
Sbjct 280 AAGGCGACACACACCACTTTGTCTCTCTTACATCGACCACTTACGGTTCTCTTGT--TC- 336
Query 223 ATGGAGCTTCCGACAGACAAACATTGCCTCATATCTCCGTTACCGGGAAGAATAACAAGA 282
| || ||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct 337 -TCGA-----CGACAGACAAACATTGCCTCACATCTCCGTTTCCGGGAAGAGTAACAAGA 390
Query 283 AGATGCCTGAAACAGAGGAGGCACGCGAGTCGTTGTCTCCTGACTCAGTGATCAACACAT 342
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 391 AGATGCCTGAAACAGAGGAGGCTCGCGACTCGTTCTCTCCTGACTCAGTGATCAACACAT 450
Query 343 GGGAGCTCATGAACGGCCTCGACGACGATTTCGACTCTGAGAATTCCGATACAAGTAAGC 402
||||||||||||||| |||||||||||| ||||| || | |||||||||||||||||||
Sbjct 451 GGGAGCTCATGAACGACCTCGACGACGAATTCGATTCCGCGAATTCCGATACAAGTAAGA 510
Query 403 GTAATTCCGTCGTAAATTTGGATTGTTTTTCTAAACCCATCAAGAATCGAGACGTGGTTA 462
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 511 GTAATTCCGTCGTAAATTTGGATTCCTTTTCTAAACCCATCACGAATCGAGACGTGGTTA 570
Query 463 TTAATGGGTCTTCGTTGAAATTGGACGAATCTTACGAAGCTGAGGAAGATTGGAGATTAC 522
||||||||||| || | | | | | ||||||||||| |||||||||||||||||||
Sbjct 571 TTAATGGGTCTGCG-T---A-T-G--G-ATCTTACGAAGATGAGGAAGATTGGAGATTAT 621
Query 523 TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TGCCTTTTAAACCTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTG 681
Query 583 ATTTAGATCCTAACATTATCTCATCTTACAAGAA-AGCATTGTCTTCTAAGCAACTAAGC 641
||||||||||||||||||||||||||||||| || |||| |||| || || || ||| ||
Sbjct 682 ATTTAGATCCTAACATTATCTCATCTTACAA-AAGAGCACTGTCCTCCAAACAGCTAGGC 740
Query 642 AAAAACACTAGTAATGGTCAC-AAAAGCGCGATAGCTCTCTCTTGCAACCACTCAAATCA 700
|| |||| ||| ||||| ||| ||| | || || | || | | ||
Sbjct 741 AAGAACAGTAGCAATGGCCACTCAAA--TC-AT---TCGGT-TT--------T--AGTC- 782
Query 701 ATCGACTTTACCAGAATCTGTATCCTCGACTCCACTGACTTCTCAGACTTTGG---AAGA 757
| | ||||||||||| |||||| || | |||| ||| ||||||||||| || ||||
Sbjct 783 A--G--TTTACCAGAATATGTATCTTCTAGTCCATTGAGTTCTCAGACTTCGGAAAAAGA 838
Query 758 CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACAAGAACAAGATAGTATTGTACTT 817
||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 839 CCAAGAGAAACCAAGATTGCTTGAAAAAGAAGATAACGAGAACAAGATAGTAGTATACTT 898
Query 818 CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAACGATATT 877
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 CACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGATTGTTGTTGCGTTAGAGCGATATT 958
Query 878 GAGAGGGTTTCAGGTTGCGGTAGAGGAACGCGACATCTCAATGGATTCCAAATATAGAAA 937
||||||||||||||||||||||||||| || |||||||||||||| |||||||| || ||
Sbjct 959 GAGAGGGTTTCAGGTTGCGGTAGAGGAGCGTGACATCTCAATGGACTCCAAATACAGGAA 1018
Query 938 AGAGCTTCAGAATGCACTCGGTGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG 997
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAGCTTCAGAATGCACTCGGCGAAGAGAAACCGGTTTGTTTGCCTCAGGTGTTTATAAG 1078
Query 998 AGGTGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGCGAACTGGC 1057
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1079 AGGCGTCCGCATTGGTGGAATTGAGGAGATCAAGATACTCAACGATGGAGGTGAACTGGC 1138
Query 1058 AGAGATGTTAAAAGATTTCCCTGCTTGTGAATCCGTGGGAGCCTGCGAAAGCTGCGGGGA 1117
|||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||| ||
Sbjct 1139 AGAGATGTTAAAAGATTTTCCTGCTTGCGAATCCATTGGAGCCTGCGATAGCTGCGGAGA 1198
Query 1118 TGCAAGGTTTGTGCCGTGTACTAATTGTGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGA 1177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1199 TGCAAGGTTTGTGCCGTGTACTAATTGTGGCGGTAGTACTAAAGTGTTTGAGGAACAAGA 1258
Query 1178 AGATGGGTTTAAGAGATGCAATGAATGCAATGAGAATGGATTGGTACGTTGTAACAGGTG 1237
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1259 AGATGGGTTTAAGAGATGCAATGGATGCAATGAGAATGGATTGGTACGTTGTAACAAGTG 1318
Query 1238 TTGTCATTAGCTAATT 1253
||||| |||| |||||
Sbjct 1319 TTGTCTTTAG-TAATT 1333
> AT3G57070.1 | Symbols: | Glutaredoxin family protein | chr3:21123924-21125647
FORWARD LENGTH=1724
Length=1724
Score = 357 bits (193), Expect = 1e-97
Identities = 366/447 (82%), Gaps = 22/447 (5%)
Strand=Plus/Plus
Query 795 AAGAACAAGATAGTATTGTACTTCACTAGCCTCAGAGGAATTCGAAAGACGTATGAAGAT 854
||| ||||||| ||| | |||||||| | ||||||||||||||||||||| || || |||
Sbjct 1050 AAG-ACAAGATTGTACTCTACTTCACAACCCTCAGAGGAATTCGAAAGACATACGAGGAT 1108
Query 855 TGTTGTTGCGTTAGAACGATATTGAGAGG-GTTTCAGGTTG-CGGTAGAGGAACGCGACA 912
||||||||||||||| ||||||||||||| | |||| | || | ||||| ||||| ||||
Sbjct 1109 TGTTGTTGCGTTAGAGCGATATTGAGAGGAG-TTCAAG-TGTCCGTAGACGAACGTGACA 1166
Query 913 TCTCAATGGATTCCAAATATAGAAAAGAGCTTC--AGAATGCACT--CGGTGAAGAGAAA 968
|||| |||||||||||||| || |||||||||| || ||| | || | |||||||
Sbjct 1167 TCTCTATGGATTCCAAATACAGGAAAGAGCTTCAAAGCGTGC-TTGGCGCCGCAGAGAAA 1225
Query 969 CCGGTTTGTTTGCCTCAGGTGTTTATAAGAGGTG-TCCGCATTGGTGGAATTGAGGAGAT 1027
|||||||||||||||||||||||||| ||||| || ||||||||| | ||||||||
Sbjct 1226 CCGGTTTGTTTGCCTCAGGTGTTTATCAGAGGAACTCA-CATTGGTGGCGTGGAGGAGAT 1284
Query 1028 CAAG-ATACTCAACGATGGAGGCGAACTGGCAGAGATGTTAAAAGATTTCCCTGCTTGTG 1086
| | | || || ||||| || ||| | ||||||||||| |||||||||||||||||||
Sbjct 1285 TATGCAG-CTAAATGATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTG 1343
Query 1087 AATC-CGTGGGAGCC-TGC-GAAAGCTGCGGGGATGCAAGGTTTGTGCCGTGTACTAATT 1143
|| | | |||| | | ||| | | |||| || ||||||||||||||||| |||||||| |
Sbjct 1344 AA-CGCTTGGG-GACATGCCGGA-GCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACT 1400
Query 1144 GTGGTGGTAGTACTAAAGTGTTTGAGGAAAAAGAAGATGGGTTTAAGAGATG-CAATGAA 1202
||| |||||| || ||||||||||| ||| |||| || |||||||| | || | | ||
Sbjct 1401 GTGATGGTAGCACCAAAGTGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCC-TAAA 1459
Query 1203 TGCAATGAGAATGGATTGGTACGTTGT 1229
|||||||||||||||||||| ||||||
Sbjct 1460 TGCAATGAGAATGGATTGGTGCGTTGT 1486
Score = 189 bits (102), Expect = 6e-47
Identities = 273/349 (78%), Gaps = 37/349 (11%)
Strand=Plus/Plus
Query 318 TCTCCTGACTCAGTGATCAACACATGGGAGCTCATGAACGGCCTCGACGACGATTTCG-A 376
|||||||| ||||| || ||||| |||||||| ||| | ||| | ||||| || |||| |
Sbjct 563 TCTCCTGATTCAGTCATAAACACTTGGGAGCTTATGGATGGCTTGGACGATGAATTCGAA 622
Query 377 CTCTGAGAATTCCGATACAAGTAAGCGTAATTCCGTCGTAAATTTGGATTGTTT-TTCTA 435
|| || |||||| | || | | |||| |||| |||||| ||||| ||| ||||
Sbjct 623 TTC-GA-AATTCCCAAAC-CG---G-GTAA--GCGTC-TAAATTCGGATT-TTTGCTCTA 671
Query 436 AACCC-ATCAAGAATC-GAGACGTG-GTTATTAATGGGTCTTCGTTGAAATTGGACGAAT 492
||||| | | ||||| || | ||| ||| | ||||||||||||||||||||||| ||||
Sbjct 672 AACCCGA-CCCGAATCGGA-ATGTGAGTT-TAAATGGGTCTTCGTTGAAATTGGATGAAT 728
Query 493 CTTAC--GA-----AG-CT-GAGGAAGA--TTGGAGA-----TTAC--TGCCTTTTAAAC 534
||||| || || | || ||||| |||||| || | || ||| |||||
Sbjct 729 CTTACGAGATTGTGAGAATCGAAGAAGACGATGGAGATTGGGTTCCTTTGACTTATAAAC 788
Query 535 CTAAGCAACCTCTGTGGAAACATATGTCTGAAGAATCATTTCTCTCTGATTTAGATCCTA 594
||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 789 CTAAGCAACCTTTGTGGAAGCATTTGTCTGAAGAATCATTTCTCTCTGATTTAGATCCCA 848
Query 595 ACATTATCTCATCTTACAAGAAAGCATTGTCTTCTAAGCAACTAAGCAA 643
|||| ||||||| ||||||||||| ||||||||||||| | |||||||
Sbjct 849 GCATTGTCTCATCCTACAAGAAAGCTTTGTCTTCTAAGCTATTAAGCAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5