BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934959
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41350.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 1524 0.0
> AT2G41350.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G21980.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:17231341-17233458 FORWARD LENGTH=1124
Length=1124
Score = 1524 bits (825), Expect = 0.0
Identities = 893/926 (96%), Gaps = 3/926 (0%)
Strand=Plus/Plus
Query 2 TTTTTCCCCCAATTGGATTAGAGACGATGAGCGACGTCACCGGTGATCTCGCGGCGGTGA 61
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TTTTACCCCAAATTAGATTAGAGACGATGAGCGACGTCACCGGTGATCTCGCGGCGGTGA 258
Query 62 GTGAAGCTAAGGGAGGTTCTGACGCCGCACGGATCTCGGAGGTGAAAGCGTGGCTCACCT 121
||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 259 GTGAAGCCAAGGGAGGTTCTGACGCCGCCCGGATATCGGAGGTGAAGGCGTGGCTCACCT 318
Query 122 CTCAGTTCGAAGCCGCCGGCAAAGAAGTCCCCAATTTCGAGTACACTCATCGAAGCATTA 181
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 319 CTCAGTTCGAAGCTGTCGGCAAAGAAGTACCCAATTTCGAGTACACTCATCGAAGCATTA 378
Query 182 CCCATCTGTATAATCTCGCCACCGCTTCTCAAGCTAAGTCTCAAGCTGCCACCATTGTCG 241
||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 379 CCCATTTGTATAATCTCGCTACCGCTTCTCAAGCTAAGTCTCAGGCTGCCACCATTGTCG 438
Query 242 CTAACGATTTTCGTCTGAAAGCTTCAGAATATCGTGCTCAAGCGGCTAGGATTAGAGAGA 301
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CTAACGATTTTCGTCTCAAGGCTTCAGAATATCGTGCTCAAGCGGCTAGGATTAGAGAGA 498
Query 302 TATTGGAGAGTGCAGGAATGTCACAAGAGAGTTTACCGTCAAATGTGGTCTCTTCAGCTC 361
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 499 TATTGGAGAGTGCAGGAATGTCACAAGAGAGCTTACCGTCAAATGTGGTCTCTTCAGCTC 558
Query 362 AAGTTCTTGCAAATGTGGCAAATTTGTTGAACATACGGGACACTGAACTGAGCAGTTTCC 421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AAGTTCTTGCAAATGTGGCTAATTTGTTGAACATACGGGACACTGAACTGAGCAGTTTCC 618
Query 422 TTGTAGCAATGGGAGACATTTCTCTGAGGAAGACTGGAGTGGAAGAGAAAAGGGCTAAAG 481
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 619 TTGTAGCAATGGGAGACATATCTCTGAGGAAGACTGGAGTGGAAGAGAAGAGGGCTAAAG 678
Query 482 CACAAAAGGAGTCTAATGCTCTTCTTGACTATACAAGGAAAGCTATACAGAGGCTGACGT 541
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 679 CACAGAAGGAGTCCAATGCTCTTCTTGACTATACAAGGAAAGCGATACAGAGGCTGACGT 738
Query 542 ATTTGAAGAAAATCCTTGCGCAGCTAGAAGACGATGTAGTCCCTTGTGAATCACAGATGG 601
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 739 ATTTGAAGAAAATCCTTGCGCAGCTAGAAGATGATGTAGTCCCTTGTGAATCACAGATGG 798
Query 602 AGAACTGGAAAACAAATTTGGAAGTAATGGCGGTGAAGGAGGAACAATACATACAGCAGT 661
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 799 AGAACTGGAAAACAAATTTGGAAGTGATGGCGGTGAAGGAGGAACAATACATACAGCAGT 858
Query 662 ACAAGAAGTAT--G-AGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACA 718
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 ACAAGAAGTATGAGCAGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACA 918
Query 719 GAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCCGTCC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 919 GAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCC 978
Query 779 TTGATACTCTAAGAAGCTACCAGGATTTACCTCCGGACAAAGCTCTGGCTGCACTAGCAA 838
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 979 TTGATACTCTACGAAGCTACCAGGATTTACCTCCGGACAAAGCTTTAGCTGCACTAGCAA 1038
Query 839 TCGAAGACAAGAAAAGACAGTTTGCAGCCGCGGAAAAGTATCTAGAAGAAGTATTACAAT 898
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1039 TCGAAGACAAGAAAAGACAGTTTACAGCCGCGGAAAAGTATCTAGAAGAAGTATTACAAT 1098
Query 899 CAGCCCTTGAGACAAACAATGAGTGA 924
||||||||||||||||| ||||||||
Sbjct 1099 CAGCCCTTGAGACAAACGATGAGTGA 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5