BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934961

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41350.2 | Symbols:  | unknown protein; BEST Arabidopsis tha...   226    9e-59


> AT2G41350.2 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G21980.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr2:17231341-17233458 FORWARD LENGTH=1124
Length=1124

 Score =  226 bits (122),  Expect = 9e-59
 Identities = 126/128 (98%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  102  AGGGTTAGAGAGATATTGGAGAGTGCAGGAATGTCACAAGAGAGCTTACCGTCAAATGTG  161
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  486  AGGATTAGAGAGATATTGGAGAGTGCAGGAATGTCACAAGAGAGCTTACCGTCAAATGTG  545

Query  162  GTCTCTTCAGCTCAAGTTCTTGCAAATGTGGCAAATTTGTTGAACATACGGGACACTGAA  221
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  546  GTCTCTTCAGCTCAAGTTCTTGCAAATGTGGCTAATTTGTTGAACATACGGGACACTGAA  605

Query  222  CTGAGCAG  229
            ||||||||
Sbjct  606  CTGAGCAG  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5