BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934962
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41360.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1419 0.0
> AT2G41360.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:17234374-17236279 FORWARD LENGTH=1318
Length=1318
Score = 1419 bits (768), Expect = 0.0
Identities = 946/1030 (92%), Gaps = 20/1030 (2%)
Strand=Plus/Plus
Query 21 ATGGCTAGAAACGTATCGTCGTGGTCATCCCTTTCTTGTTTGCCCGACGAGATGGTTCTG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAGAAACGTATCGTCGTGGTCATCCCTTTCTTGTTTGCCCGACGAGATGGTTCTG 60
Query 81 AACTGCTTAGTCCGCGTCCCGAGACGGTACTACGAAAACGTCGCTTGCGTCTC-GAGAAG 139
|||||| ||| ||||||||||||||| |||||||||||| || |||||||||| | |||
Sbjct 61 AACTGCCTAGCCCGCGTCCCGAGACGCTACTACGAAAACATCTCTTGCGTCTCCGT-AAG 119
Query 140 GCTCAGGTCCCTTGTGCGCACGCCTGAGCTCTACCGGATGCGATCCCTCCTCCACAAGGA 199
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTCAGGTCCCTTGTGCGTACCCCTGAGCTCTACCGGATGCGATCCCTCCTCCACAAGGA 179
Query 200 TTCCGTCTACGTCTGCTTCTGCGATAGGGAGAATTATTCTACTGATGCCACCTATCTTTG 259
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TTCCATCTACGTCTGCTTCTGCGATAGGGAGAATTATTCGACTGATGCCACCTATCTTTG 239
Query 260 GTTCACTCTCCGTCCAACGA--G-GACAACGGGGTATCAATTGGTCCCGATCTCGTTCCC 316
||||||||||||||| |||| | ||| | || |||||||||||||||| ||||||||||
Sbjct 240 GTTCACTCTCCGTCCCACGACAGCGACGATGGAGTATCAATTGGTCCCGCTCTCGTTCCC 299
Query 317 TATTCATTGTTTCATGTTCCGATCTTCCACGGTCGCGGTGGATTCAGAGATATACTTTGT 376
|| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 300 TAGTCATAATTTCATGTTCCGAGCTTCCACCGTCGCGGTGGATTCAGAGATATACTTTGT 359
Query 377 GGGCGGACGTCCAAACCCGACCGAGCTGTGGATCCTTGATACCCGGTCTGGCAAGTTACG 436
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 GGGCGGACGTCCAAACCCGACCGAGTTGTGGATCCTTGATACCCGGTCTGGCAAGTTACG 419
Query 437 TCAGGGCCCGATCAAGCCGGAGTCCCGACGAATTGCGTCCAGCAACGCCGTGGGAGTATT 496
||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||
Sbjct 420 TCAGGGCCCGATCAAGCCGGAGTTCCTACGAATTGCGTCTAGCAGCGCCGTGGGAGTATT 479
Query 497 CGGCGGAAAGATATATGTAATCCAAGACTTGATACAAGATGAGACCGAAGAGCAGGTTTA 556
|| |||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 480 CGACGGAAAGATACATGTGATCCAAGACTTGAAACAAGATGAGACCGAAGAACAGGTTTA 539
Query 557 CGACCTAGAAACGCAAACTTGGAAAGTTGTAGGAGTCCCTGTCCCTGACGAGAAAGTGGA 616
||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 540 CGACCTAGAAACGCAAACTTGGAAAGTCGTGGGAGTCCCTGTCCCTGACGAGAAAGCGGA 599
Query 617 TACTAAACCGA-TGATGGCGTCAAGTGTGTCACTGGAGGGGAAGGTTTATGCTATGGATG 675
|| || ||||| | |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 600 TAGTAGACCGAAT-ATGGTGTCAAGTGTGTCATTGGAGGGGAAGGTTTATGCTAAGGATT 658
Query 676 ATG-ATAGTATCATTGTCTACAATCTGAGACAAGGTACAAGGAAGGAGAAACTGGA-TAT 733
|| | ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 659 TTGGA-AGTATCAGTGTCTACAATCTGAGACAAGGTACAAGAAAGGAGAAACTGGAGT-T 716
Query 734 GCCAATTGATGGGAATTGGGTTTGGTGCATATGTGTGGCAAACAATGTGCTCTTTGCttt 793
||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 717 GCCAATTGATGATAGGTGGGTTTCGTGCATGTGTGTGGCAAACAATGTGCTCTTTGCTTT 776
Query 794 ttttACCAAATGTGGGCTAATGTGGCTTGACACAAAGCTTAAC---GTATGGAGAGTGGT 850
||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 777 TTTTACCAAATATGGGCTACTGTGGCTTGACACAAAGCTTAACAACGTATGGAGAGTGGT 836
Query 851 TACTGGTGATGTGCAGACACTGCAGCGAAAGTTGTATGGCTCTGCAATGGCGGAATATTA 910
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 TACTGGTGATGTGCAGACACTGCATCGAAAGTTGTATGGCTCTGCAATGGCGGAATATTA 896
Query 911 TGGGAAGCTAGCTATTTTCTGGAGAGAAAGAGACATTAGTACTACTATTA---CTACAAA 967
||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct 897 TGGGAAGCTAGCTATTTTCTGGAGAGAAAGATACATTAGTACTAGTATTAATACTACAAA 956
Query 968 GAAGAGGAAGAAGATGAATAATAATAACAAGGAGGAGAAGATCTGGTGTGCATTGATCGC 1027
||| | || || | ||||| || || ||||| |||||||| |||| ||||||||||||
Sbjct 957 GAATAATAATAA--T-AATAACAAGAAGAAGGAAGAGAAGATTTGGTCTGCATTGATCGC 1013
Query 1028 GTTGGATAGG 1037
|||| |||||
Sbjct 1014 GTTGAATAGG 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5