BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934964
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41370.1 | Symbols: BOP2 | Ankyrin repeat family protein / B... 2484 0.0
AT3G57130.1 | Symbols: BOP1 | Ankyrin repeat family protein / B... 822 0.0
> AT2G41370.1 | Symbols: BOP2 | Ankyrin repeat family protein /
BTB/POZ domain-containing protein | chr2:17237745-17240440
REVERSE LENGTH=1987
Length=1987
Score = 2484 bits (1345), Expect = 0.0
Identities = 1462/1517 (96%), Gaps = 13/1517 (1%)
Strand=Plus/Plus
Query 8 TTTTATAAAAAAGATGAGCAGTCTTGAAGAATCATTGAGATCTCTATCGTTGGATTTCCT 67
|||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 226 TTTTAT-AAAAAGATGAGCAATCTTGAAGAATCTTTGAGATCTCTATCGTTGGATTTCCT 284
Query 68 AAACCTACTAATCAACGGTCAAGCTTTCTCCGACGTGACTTTCAGCGTTGAAGGTCGTTT 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GAACCTACTAATCAACGGTCAAGCTTTCTCCGACGTGACTTTCAGCGTTGAAGGTCGTTT 344
Query 128 AGTCCACGCTCACCGTTGTATCCTCGCCGCACGGAGTCTTTTCTTTCGCAAATTCTTCTG 187
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 345 AGTCCACGCTCACCGTTGTATCCTCGCCGCACGGAGTCTTTTCTTCCGCAAATTCTTTTG 404
Query 188 TGGGACAGACTCACCACAACCTGTCACTGGTATAGACCCGACCCGACATGGGTCCGTACC 247
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 405 TGGGACAGACTCACCACAACCTGTCACAGGTATAGACCCGACCCAACATGGGTCCGTACC 464
Query 248 CGCTAGCCCAACACGAGGCTCCACGGCCCCAGCTGGAGTTATACCAGTGAACTCAGTCGG 307
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 465 CGCTAGCCCAACAAGAGGCTCCACGGCCCCAGCTGGAATTATACCAGTGAACTCAGTCGG 524
Query 308 TTATGAGGTGTTTCTGTTGCTACTTCAGTTTCTTTATAGCGGACAAGTCTCCATCGTGCC 367
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TTATGAGGTTTTTCTGTTGCTACTTCAGTTTCTTTATAGCGGACAAGTCTCCATCGTGCC 584
Query 368 GCAGAAACACGAGCCTAGACCTAATTGTGGCGAGAGAGGATGTTGGCACACTCATTGCTC 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GCAGAAACACGAGCCTAGACCTAATTGTGGCGAGAGAGGATGTTGGCACACTCATTGCTC 644
Query 428 AGCCGCCGTTGATCTTGCTCTTGATACTCTCGCCGCCTCTCGTTACTTCGGCGTCGAGCA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AGCCGCCGTTGATCTTGCTCTTGATACTCTCGCCGCCTCTCGTTACTTCGGCGTCGAGCA 704
Query 488 GCTCGCATTGCTCACTCAGAAACAATTGGCAAGCATGGTGGAGAAAGCCTCTATTGAAGA 547
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 705 GCTCGCATTGCTCACCCAGAAACAATTGGCAAGCATGGTGGAGAAAGCCTCTATCGAAGA 764
Query 548 TGTGATGAAAGTTTTAATAGCATCAAGAAAGCAAGACATGCATCAATTATGGACCACTTG 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 765 TGTGATGAAAGTTTTAATAGCATCAAGAAAGCAAGACATGCATCAATTATGGACCACCTG 824
Query 608 CTCTCACTTAGTTGCTAAATCAGGTCTCCCACCAGAGATTCTAGCCAAACATCTCCCTAT 667
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 825 CTCTCACTTAGTTGCTAAATCAGGTCTCCCACCAGAGATTCTTGCCAAGCATCTCCCTAT 884
Query 668 CGATGTTGTCGCCAAAATAGAAGAGCTTCGTCTGAAATCTTCTATAGCTCGCCGTTCTCT 727
|| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 885 TGACGTCGTCACCAAAATAGAAGAGCTTCGTCTTAAATCTTCTATAGCTCGCCGTTCTCT 944
Query 728 AATGCCTCACAACCACCACCATGATCTCAGCGTGGCTCAAGACCTAGAAGATCAAAAGAT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AATGCCTCACAACCACCACCATGATCTCAGCGTGGCTCAAGACCTAGAAGATCAAAAGAT 1004
Query 788 TAGAAGGATGCGACGAGCTTTGGATTCATCAGACGTGGAGCTAGTGAAGCTGATGGTTAT 847
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1005 TAGAAGGATGAGACGAGCTTTGGATTCATCAGACGTGGAACTAGTGAAGCTGATGGTAAT 1064
Query 848 GGGAGAAGGACTCAATCTTGATGAGTCATTAGCATTGCATTACGCTGTTGAAAGTTGTAG 907
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1065 GGGAGAAGGACTCAATCTTGATGAGTCGTTAGCATTGCATTACGCTGTTGAAAGCTGTAG 1124
Query 908 TAGAGAAGTTGTCAAGGCTTTGCTTGAACTTGGAGCTGCCGACGTGAATTATCCGGCGGG 967
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1125 TAGAGAAGTTGTGAAGGCTTTGCTTGAGCTTGGAGCTGCCGATGTGAATTATCCGGCGGG 1184
Query 968 TCCAGC-GGGAAAAACACCGTTGCACATTGCGGCTGAGATGGTCTCTCCAGACATGGTGG 1026
||| || ||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1185 TCCGGCAGGGAAAA-CACCTTTGCACATCGCGGCTGAGATGGTCTCTCCAGACATGGTGG 1243
Query 1027 CTGTTCTGTTAGACCACCACGCTGATCCTAATGT-ACGGACAGTTGGTGGAATCACTCCT 1085
||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||
Sbjct 1244 CTGTTCTGTTAGACCACCATGCTGATCCTAATGTGA-GGACAGTTGGTGGAATCACGCCT 1302
Query 1086 CTTGATATCCTTAGAACATTAACTTCGGATTTCTTGTTCAAGGGGGCAGTTCCTGGATTG 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 CTTGATATCCTTAGAACATTAACTTCGGATTTCTTGTTCAAGGGGGCAGTTCCTGGATTG 1362
Query 1146 ACTCACATTGAACCGAACAAGCTTAGGCTTTGCCTCGAGCTTGTTCAATCAGCTGCAATG 1205
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1363 ACTCACATTGAACCGAATAAACTTAGGCTTTGCCTCGAGCTTGTTCAATCCGCTGCAATG 1422
Query 1206 GTGATATCTCGAGAAGAAGGAAACAATAGCAACAATCAAAATAATGATAACAATACTGGG 1265
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1423 GTGATATCTCGAGAAGAAGGAAACAATAGCAACAACCAAAACAATGATAACAATACCGGG 1482
Query 1266 ATTTACCCTCACATGAATGAGGAGCACAATAGTGGAAGCAGTGGAGGGAGCAATAACAAT 1325
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 ATTTACCCTCATATGAATGAGGAGCACAATAGTGGAAGCAGTGGAGGGAGCAATAACAAT 1542
Query 1326 TTGGATTCAAGATTGGTTTATCTCAATCTTGGAGCAGGTACGGGTCAGATGGGTCCAGGT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 TTGGATTCAAGATTGGTTTATCTCAATCTTGGAGCAGGTACGGGTCAGATGGGTCCAGGT 1602
Query 1386 CGAGATCAAGGGAATGACCATATCAGTCAGAGGGAAGGTATGAGTCGGcatcatcatcat 1445
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1603 CGAGATCAAGGGGATGACCATAACAGTCAGAGGGAAGGTATGAGTCGGCATCATCATCAT 1662
Query 1446 catcatcaagacccatctacaat--at-atcaccatcatcaacatcaCTTCTAGTTCTCT 1502
||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1663 CATCA--A-GACCCATCTACAATGTATCATCACCATCATCAACATCACTTCTAGTTCTCT 1719
Query 1503 AT-T-GGTCTCTATATC 1517
|| | ||||||||||||
Sbjct 1720 ATATTGGTCTCTATATC 1736
> AT3G57130.1 | Symbols: BOP1 | Ankyrin repeat family protein /
BTB/POZ domain-containing protein | chr3:21147835-21150027
FORWARD LENGTH=1404
Length=1404
Score = 822 bits (445), Expect = 0.0
Identities = 797/965 (83%), Gaps = 32/965 (3%)
Strand=Plus/Plus
Query 282 GGAGTTATACCAGTGAACTCAGTCGGTTATGAGGTGTTTC-T-GTTGCTACTTCAGTTTC 339
||||| ||||| || |||||||||||||| || || |||| | || |||||||| |||
Sbjct 247 GGAGTCATACCGGTTAACTCAGTCGGTTACGAAGT-TTTCTTACTT-CTACTTCA-ATTC 303
Query 340 TT-TATAGCGGACAAGTCTCCATCGTGCCGCAGAAACACGAGCCTAGACCTAATTGTGGC 398
|| || || || |||||||| || || || || || |||||||| ||| | ||||||||
Sbjct 304 TTGTACAGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGTGGA 363
Query 399 GAGAGAGGATGTTGGCACACTCATTGCTCAGCCGCCGTTGATCTTGCTC-TT-GATACTC 456
|| |||||||| |||||||| |||||| | || ||||| |||| | ||| || |||| |
Sbjct 364 GATAGAGGATGCTGGCACACGCATTGCACTGCAGCCGTCGATC-T-CTCTTTAGATATTT 421
Query 457 TCGCCGCCTCTCGTTACTTCGGCGTCGAGCAGCTCGCATTGCTCACTCAGAAACAATTGG 516
| |||||| |||| ||||| ||||||||||||||||| ||||| ||||||||||| |||
Sbjct 422 TAGCCGCCGCTCGCTACTTTGGCGTCGAGCAGCTCGCGTTGCTTACTCAGAAACATTTGA 481
Query 517 CAAGCATGGTGGAGAAAGCCTCTATTGAAGATGTGATGAAAGTTTTAATAGCATCAAGAA 576
|||| ||||||||||||||||| |||||||||||||||||||| | ||||| |||||||
Sbjct 482 CAAGTATGGTGGAGAAAGCCTCCATTGAAGATGTGATGAAAGTGCTCATAGCTTCAAGAA 541
Query 577 AGCAAGACATGCATCAATTATGGACCACTTGCTCTCACTTAGTTGCTAAATCAGGTCTCC 636
||||||||||||||||||||||||| ||||||||| ||||| | || ||||| ||||| |
Sbjct 542 AGCAAGACATGCATCAATTATGGACTACTTGCTCTTACTTAATCGCCAAATCCGGTCTTC 601
Query 637 CACCAGAGATTCTAGCCAAACATCTCCCTATCGATGTTGTCGCCAAAATAGAAGAGCTTC 696
||| |||||||||||||||||||||||| ||||| |||| ||||| || || ||||| |
Sbjct 602 CACAAGAGATTCTAGCCAAACATCTCCCAATCGAACTTGTAGCCAAGATTGAGGAGCTCC 661
Query 697 GTCTGAAATCTTCTATAGC-TCGCCGTTCTCTAATGCCTCACAACCACCACCATGATCTC 755
|||| |||||||| || || || |||||| |||||||||||| |||| ||| | | |||
Sbjct 662 GTCTCAAATCTTCAAT-GCCTCTCCGTTCACTAATGCCTCACCACCATGACC-TAACCTC 719
Query 756 -AGCGTGGCTCAAGACCTAGAAGATCAAAAGATTAGAAGGATGCGACGAGCTTTGGATTC 814
| | | | | ||||| ||||| || ||||| || |||||| |||| || ||||| ||
Sbjct 720 GA-CTT---T-A-GACCTCGAAGACCAGAAGATCAGGAGGATGAGACGTGCATTGGACTC 773
Query 815 ATCAGACGTGGAGCTAGTGAAGCTGATGGTTATGGGAGAAGGACTCAATCTTGATGAGTC 874
|| || || ||||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 774 CTCTGATGTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTC 833
Query 875 ATTAGCATTGCATT-ACGCTGTTGAAAGTTGTAGTAGAGAAGTTGTCAAGGCT-TTGCTT 932
|||| ||| ||| |||| ||||||| |||||||||||| ||||| ||||| || |||
Sbjct 834 CCTAGCTTTG-ATTTACGCGGTTGAAAATTGTAGTAGAGAGGTTGTAAAGGCACTT-CTT 891
Query 933 GAACTTGGAGCTGCCGACGTGAATTATCCGGCGGGTCC-AGC-GGGAAAAACAC-CGTTG 989
|| |||||||| || || ||||| ||||| |||||||| | | ||||||| | | | ||
Sbjct 892 GAGCTTGGAGCAGCTGATGTGAACTATCCCGCGGGTCCCA-CAGGGAAAACCGCTC-TT- 948
Query 990 CACATTGCGGCTGAGATGGTCTCTCCAGACATGGTGGCTGTTCTGTTAGACCACCACGCT 1049
|||||||||||||| ||||| ||||| ||||||||||||||| | | |||||||||||
Sbjct 949 CACATTGCGGCTGAAATGGTGTCTCCGGACATGGTGGCTGTTTTACTCGACCACCACGCC 1008
Query 1050 GATCCTAATGTACGGACAGTTGG-TGGAATCACTCCTCTTGATATCCTTAGAACATTAAC 1108
|| ||||| || | |||||| || ||||||||||||||| || |||||| |||| ||||
Sbjct 1009 GACCCTAACGTCCAGACAGT-GGATGGAATCACTCCTCTCGACATCCTTCGAACCCTAAC 1067
Query 1109 TTCGGATTTCTTGTTCAAGGGGGCAGTTCCTGGATTGACTCACATTGAACCGAACAAGCT 1168
|| ||||| ||||||||||||||| |||||||||||||||||||||| || || |||||
Sbjct 1068 GTCAGATTTTTTGTTCAAGGGGGCAATTCCTGGATTGACTCACATTGAGCCCAATAAGCT 1127
Query 1169 TAGGCTTTGCCTCGAGCTTGTTCAATCAGCTGCAATGGTGATATCTCGAGAAGAAGGAAA 1228
||||||||| |||||||| || || || || ||| |||| ||||| || |||||||||||
Sbjct 1128 TAGGCTTTGTCTCGAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAA 1187
Query 1229 CAATA 1233
|||||
Sbjct 1188 CAATA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5