BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934970
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41410.1 | Symbols: | Calcium-binding EF-hand family protei... 1192 0.0
> AT2G41410.1 | Symbols: | Calcium-binding EF-hand family protein
| chr2:17261728-17262884 REVERSE LENGTH=1157
Length=1157
Score = 1192 bits (645), Expect = 0.0
Identities = 677/693 (98%), Gaps = 0/693 (0%)
Strand=Plus/Plus
Query 10 TCTTCTCCGATATGAAGCTCGCCGCTAGCCTCAACCGCCTCAGCCCCAAACGTCTCTTCC 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TCTTCTCCGATATGAAGCTCGCCGCTAGCCTCAACCGCCTCAGCCCCAAACGTCTCTTCC 198
Query 70 GTTCCAAATCAAAAGCTTCCGTCTCCAGATCTGAGCCTTCTTCCTTCAGCTCCAATGCTT 129
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GTACCAAATCAAAAGCTTCCGTCTCCAGATCTGAGCCTTCTTCCTTCAGCTCCAATGCTT 258
Query 130 CTTCCTCTTCCTCTGATGGATCGTACGGTAACCTCAAACAAGGTCCAACCGCGACTCCGA 189
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 259 CTTCCTCTTCCTCTGATGGATCTTACGGTAACCTCAAACAAGGTCCAACCGCGACTCCGA 318
Query 190 TCAGTGTTCTCCCTCAAAACTCCGGTGATTTTTACACTGAGCTTATTCAAGCGTTTAAAT 249
||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 319 TCAGTGTTCTCCCTCAAAACTCCGGCGATTTTTACACTGAGCTTGTTCAAGCTTTTAAAC 378
Query 250 TGATCGATCGTGATGATGACGGTGTTGTTTCCAGAGGAGATCTCGCGGCGTTGATTAGCA 309
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGATCGATCGTGATGACGACGGTGTTGTTTCCAGAGGAGATCTCGCGGCGTTGATTAGCA 438
Query 310 GGTTAAGTCCTGAACCACCGAGTCAAGAAGAGGTGAGTCTGATGCTAAGAGAAGTAGACG 369
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 439 GGTTAAGTCATGAACCACCGAGTCAAGAAGAGGTGAGTTTGATGCTAAGAGAAGTAGACG 498
Query 370 GCGGAGACGGTGGTTGTATCAGCCTTGAAGAGCTTGCTAGCCGTGTCGCTGGTACTTCCG 429
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 499 GCGGAGACGGTGGTTGTATCAGCCTTGAAGATCTTGCTAGCCGTGTCGCTGGTACTTCCG 558
Query 430 GTGAAGGATCTGTTGAGACGGAGGAGCTGAGAGAGGTGTTCGAGATTTTTGACGTGGATC 489
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GTGAAGGCTCTGTTGAGACGGAGGAGCTGAGAGAGGTGTTCGAGATTTTTGACGTGGATC 618
Query 490 GTAACGGGAAAATATCGGCGGAGGAGTTACACAGAGTATTTGGAGTGATCGGAGATGAAC 549
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 619 GTAACGGAAAAATATCGGCGGAGGAGTTACACAGAGTTTTTGGAGTGATCGGAGATGAAC 678
Query 550 GGTGCACGTTAGAAGAGTGTATGCGTATGATAGCGACGGTTGATGGAAACGGTGACGGTT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGTGCACGTTAGAAGAGTGTATGCGTATGATAGCGACGGTTGATGGAAACGGTGACGGTT 738
Query 610 TTGTTTGCTTCGAAGACTTTTGCCGCATGATGGCTCCAGCGATGAATGATCATCATCATT 669
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 739 TTGTTTGCTTCGATGACTTTTGCCGCATGATGGTTCCAGCGATGAATGATCATCATCATT 798
Query 670 AGAATCATGTTTGATTGATGATTGTGACATCAC 702
|||||||||||||||||||||| ||||||||||
Sbjct 799 AGAATCATGTTTGATTGATGATGGTGACATCAC 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5