BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934977

Length=1117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41473.1 | Symbols:  | F-box family protein | chr2:17294453-...   292    4e-78


> AT2G41473.1 | Symbols:  | F-box family protein | chr2:17294453-17294728 
REVERSE LENGTH=276
Length=276

 Score =  292 bits (158),  Expect = 4e-78
 Identities = 220/249 (88%), Gaps = 8/249 (3%)
 Strand=Plus/Plus

Query  27   GAACTTCCTTTTGACTTGGTC-TGTGAGATACTTGCAAGGGTTCCAGTTGAGGACTTGCT  85
            |||||| |||||||||||||| | |||||||||||||| |||||| ||| |  |||||||
Sbjct  7    GAACTTGCTTTTGACTTGGTCAT-TGAGATACTTGCAAAGGTTCCGGTTAAATACTTGCT  65

Query  86   ACGGTTTAGATGTGTCTGCAAAAGCTGGCGTTCGTTGTTCCAAGATGAGGGATTCATCAG  145
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  66   ACGGTTTAGATGTGTCTGCAAAAGCTGGCGTTCGTTGTTCCAAGATGAGAGATTCATCAG  125

Query  146  AAAGCACACAACTCATGCCCCGAGTATGTTTCTATTGGCGGCTAATTGGTGGCCACAGTA  205
            || ||||||||||||||||||||| ||||||||| || | |||  | | ||||||| |||
Sbjct  126  AATGCACACAACTCATGCCCCGAGCATGTTTCTACTGTCCGCT--T-GTTGGCCACGGTA  182

Query  206  TAGACT---GCGCACTTGTACTTACGAAGGTCTTACGCTAAAGATGATATTCCAAGAGCC  262
            || ||    |||||||||||||||| ||||||  | ||||||||||||||||||||| ||
Sbjct  183  TACACCACCGCGCACTTGTACTTACCAAGGTCGCAGGCTAAAGATGATATTCCAAGATCC  242

Query  263  TGAATTGAA  271
            |||||||||
Sbjct  243  TGAATTGAA  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54768794595


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5