BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934985
Length=3344
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41520.1 | Symbols: TPR15 | Heat shock protein DnaJ with tet... 3136 0.0
> AT2G41520.1 | Symbols: TPR15 | Heat shock protein DnaJ with tetratricopeptide
repeat | chr2:17317485-17323021 FORWARD LENGTH=3820
Length=3820
Score = 3136 bits (1698), Expect = 0.0
Identities = 1875/1961 (96%), Gaps = 10/1961 (1%)
Strand=Plus/Plus
Query 1389 TCAGCCAGGGATTCATTTCTCTTTACGGCAGAGGATCATGGGAGTAGTTGTATGCCGAAT 1448
|||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 1573 TCAGCCAGGGATTCATCTCTCTTCACGGCAGAGGATCATGGGAGTACTTGTATTCCGAAT 1632
Query 1449 TTTTCTTTCTCAGCGTCCACCTCTCAGGGAACAATACCACATAAAAAGCTTCAAGCTGTA 1508
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1633 TTTTCTTTCTCAGCGTCCACCTCTCAGGAAACAATACGACATAAAAAGCTTCAAGCTGTA 1692
Query 1509 AAGAAATATAGGAGGAAAGTCAATAACAGTGTGCCCAAAAACAATCTTAATACCACCATG 1568
|||||||||||||||||||| || |||||| |||| |||| |||||||||| ||||||||
Sbjct 1693 AAGAAATATAGGAGGAAAGTTAACAACAGTTTGCCGAAAAGCAATCTTAATGCCACCATG 1752
Query 1569 CGAAACAATGAAGAAAATCAACGTGTGAATACAGGTCAATCCAAACAGGACTCAGGCTCT 1628
||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 1753 CGAAACAATCAAGAGAATCAACCTGTGAATACAGGTCAAGCCAAACAGGACTCGGGCTCC 1812
Query 1629 ACATCGATGATGCCTGATGTCTGTGAGGTTTGGCGACTAAGGGGAAATCAAGCCTACAAA 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 ACATCGATGATGCCTGATGTCTGTGAGGTTTGGCGACTAAGGGGAAATCAAGCCTACAAA 1872
Query 1689 AATGGTAATATGTGTAAAGCTGAGGAATGTTACACACACGGTATTAGTTCTTCCCCGTCA 1748
|||||| |||||| |||||||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 1873 AATGGTTATATGTCTAAAGCTGAGGAATGTTACACACATGGTATTAATTCTTCTCCGTCA 1932
Query 1749 AATGATAATTCAGAATACTCTGTGAAGCCTCTTGCGCTTTGCTATGGTAACCGCGCCGCA 1808
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 AAAGATAATTCAGAATACTCTGTGAAGCCTCTTGCGCTTTGCTATGGTAACCGCGCCGCA 1992
Query 1809 GCCCGGATTTCTCTTGGAAGATTGAGGGAGGCTATAAGCGACTGTGAGATGGCTGCCTCA 1868
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GCACGGATTTCTCTTGGAAGATTGAGGGAGGCTATAAGCGACTGTGAGATGGCTGCCTCA 2052
Query 1869 CTTGATCCAAGCTACATTAAAGCGTATACGAGAGCTGCAAATTGTCATCTTGTGCTGGGG 1928
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2053 CTTGATCCTAGCTACATTAAAGCGTATATGAGAGCTGCAAATTGTCATCTTGTGCTGGGG 2112
Query 1929 GAACTTGGAGCAGCAGTGCAGTATTTTAATAAATGCATGGAATCCACCTCTAGTGTCTGC 1988
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2113 GAACTTGGATCAGCAGTGCAGTATTTTAATAAATGCATGAAATCCACCTCTAGTGTCTGC 2172
Query 1989 TTGGATCGACGAACTACTATAGAAGCAGCTGAAGGTTTACAACGGGCTCAAAGGGTAGCT 2048
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2173 TTGGATCGACGAACTACTATAGAAGCAGCTGAAGGTTTACAACAGGCTCAAAGGGTAGCT 2232
Query 2049 GACTTTACCAGCTGCGCATCCAAT-TTTTTGGAAAAGAGAACACCCGATGGCGCATCTGA 2107
|||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 2233 GACTTTACCAGCTGTGCATCC-ATATTTTTGGAAAAGAGAACACCTGATGGCGCATCTGA 2291
Query 2108 CGCATTGGTTCCAATTGCCAATGCCTTAACAATTAGTTCATGCTCAGATAAATTGCTTCA 2167
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2292 CGCATTGGTTCCAATTGCCAATGCCTTATCAATTAGTTCATGCTCAGATAAATTGCTTCA 2351
Query 2168 AATGAAGGCCGAGGCCCTATTTATGATCCGACGATATAAAGAAGTGATCGAGCTGTGTGA 2227
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 2352 AATGAAGGCCGAGGCCCTATTTATGATCCGACGATATAAAGAAGTTATTGAGCTTTGTGA 2411
Query 2228 GAATACCCTTCAGACGGCTGAGAGGAATTTTGTTTCAGCAGGGCTTAGTGGGACGACAAA 2287
||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2412 GAATACCCTTCAGACTGCTGAGAGGAATTTTGTTTCAGCAGGGATTGGTGGGACGACAAA 2471
Query 2288 TGTTGATGGATTAGGGTCTACATATCACTCGCTAATAGTTTGGAGATGGAACATGATTTC 2347
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2472 TGTTAATGGATTAGGGTCTACGTATCACTCGCTAATAGTTTGGAGATGGAACAAAATTTC 2531
Query 2348 CAAGTCGCACTTCTACTTGGGAAACCTTGAGAAGGCCCTTGATATATCAGAAAAGTTACA 2407
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2532 CAAGTCGCACTTCTACTTGGGAAACCTTGAGAAGGCCCTTGATATATTAGAAAAGTTACA 2591
Query 2408 GCAAGTGGGATATACCTGCAATGAGAATCATGAAGAGTGTCGTGAGTCACCAGCTTCTTT 2467
|||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2592 GCAAGTGGAATATACCTGCAATGAAAATCAGGAAGAGTGTCGTGAGTCACCAGCTTCTTT 2651
Query 2468 AGTGGCCACCATTTCTGAACTCTTACGTTACAAGAACGCAGGTAATGAAGCTGTTCGGGA 2527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2652 AGTGGCCACCATTTCTGAACTCTTACGTTACAAGAACGCAGGTAATGAAGCTGTTCGGGA 2711
Query 2528 CAGAAAGTATATGGAAGCAGTAGAGCAGTATACTGCTGCACTATCAAGAAATGTTGACTC 2587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2712 CAGAAAGTATATGGAAGCAGTAGAGCAGTATACTGCTGCACTATCAAGAAATGTTGACTC 2771
Query 2588 ACGCCCGTTTGCAGCAATTTGCTTTTGCAATCGTGCGGCTGCTAATCAGGCCCTAGTCCA 2647
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2772 ACGCCCTTTTGCAGCAATTTGCTTCTGCAATCGTGCGGCTGCTAATCAGGCCCTAGTTCA 2831
Query 2648 AATTGCCGATGCAATTGCCGACTGTAGTCTTGCCATGGCTCTTGATGAAAACTACACAAA 2707
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2832 AATTGCTGATGCAATTGCCGACTGTAGTCTTGCCATGGCTCTTGATGAAAACTACACAAA 2891
Query 2708 GGCAGTTTCCAGGAGAGCCACATTACATGAGATGATCAGAGATTATGATCAAGCAGCTAG 2767
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2892 GGCAGTTTCCAGGAGAGCCACATTACATGAGATGATCAGAGACTATGATCAAGCAGCTAG 2951
Query 2768 TGATCTCCAGAGGCTTATCAGCATTCTTGTAAAGCAAAGTGATAAGACAAAAACGCCAGA 2827
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2952 TGATCTCCAGAGACTTATCAGCATTCTCGTAAAGCAAAGTGATAAAACAAAAACGCCAGA 3011
Query 2828 GATTTCTG-CTGATCGTGCAAGCAGCAGGAAAGAACTAAAGCAGGCCCGTCAACGGTTGT 2886
|| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3012 GACATCTGTC-GATCGTGCAAGTAGCAGGAAAGAACTAAAGCAGGCCCGTCAACGGTTGT 3070
Query 2887 CTGTGATGGAAGAAAAATCTAAAGAAGGCATTCCTCTGGATTTCTTCCTCATCATGGGAG 2946
||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||
Sbjct 3071 CTGTGATGGAAGAAAAATCTAAAGAGGGAATTCATCTGGATTTCTTCCTAATCATGGGAG 3130
Query 2947 TGAAGACATCTGACTCTGCTGCTGATATCAAAAAGGCATACCGCAAAGCAGCTCTTAGAC 3006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3131 TGAAGACATCTGACTCTGCTGCTGATATCAAAAAGGCATACCGCAAAGCAGCTCTTAGAC 3190
Query 3007 ATCACCCAGACAAGGCTGCACAGATCCTTGTCAGAAGCGAAAGTGAAGGACCGTGGTTGA 3066
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 3191 ATCACCCAGACAAAGCTGCACAGATTCTTGTCAGAAGCGAAAGTGAAGGACCATGGTTGA 3250
Query 3067 AGGAAATATTAGAAGAGGTTCACAAGGGTGCAGATAGGCTCTTCAAAATGATTGGAGAGG 3126
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3251 AGGAGATATTAGAAGAGGTTCACAAGGGTGCAGATAGGCTCTTCAAAATGATTGGAGAGG 3310
Query 3127 CATATTCAGTTCTTTCTGACCCAATTAAGAGGTCGGACTATGAACTTGATGAAGAGATTA 3186
|||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||
Sbjct 3311 CATATTCAGTTCTTTCTGACCCAACTAAGAGGTCGGATTATGAACTTGAGGAAGAAATTA 3370
Query 3187 GAAAAGCCAGGGCATCTAGAGAAAGCTACAG-A--AGAAAGGCTGCAGAAGCAAGTAGCC 3243
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 3371 GAAAAGCCAGGGCATCTAGAGAAAGCTACAGGAGCAGAAAGGCTGCAGAAGCAAGTAGCC 3430
Query 3244 CTCCATATCAGACAAGCAGGCGACATTGGAAGGACAGCGGGAGGACAAACCGAAACACGC 3303
||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||
Sbjct 3431 CTCCATATCAGACAAGCAGGCGATACTGGAAGGACAGTTGGAGGACAAACCAAAACACGC 3490
Query 3304 CTTCTTGGTGGTGGTAAAAGGCTAAAATTCTTGGTGGCGTA 3344
|||||||||||| | || ||||||||||||||||||||||
Sbjct 3491 CTTCTTGGTGGTAG-AA--GGCTAAAATTCTTGGTGGCGTA 3528
Score = 1980 bits (1072), Expect = 0.0
Identities = 1288/1391 (93%), Gaps = 19/1391 (1%)
Strand=Plus/Plus
Query 1 TGAAAGAATCGAATTTTTGGATGTCTCCTGCGGCGGTGGAGATTGGGTCTCCGGTTGAAA 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TGAAAGAATCCAATTTTTGGATGTCTCCTGCGGCGGTGGAGATTGGGTCTCCGGTTGAAA 217
Query 61 AAGTCTCTTCT-TTCCTAAACCCTATGGATAATTTCTCTGCATTTTTCCCGGAGAGTGTT 119
||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 218 AAGTCTCTTCTGTTC-TAAACCCTATGGAAAATTTCTCTGCATTTTTTCCGGAGAGTGTT 276
Query 120 CACTCTCACGATCATA-GAACTATGGACTCTTCGTTCTCCTTCGGATTTGGAGCTGGTTC 178
|||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 277 CACTCTCACGATCA-ACGAACCATGGGCTCTTCGTTCTCCTTCGGATTTGGAGCTGGTTC 335
Query 179 AGGACAAACGACGAAGACTCGGCAAAAGCCGAGGCTGGTGAAATTGAGGAAGAACGGAAG 238
||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 336 AGGACAAACCACGAAGACTCGACACAAGCCGAGGCTCGTGAAATTGAGGAAGAACGGAAG 395
Query 239 AGAGGTGAAAAGACCCTCTTTTTCCGGCGAGATCCTCTCAGGTTTCAACCCGTTTGCGCC 298
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 396 AGAGGTGAAAAAACCTTCTTTTTCCGGCGAGATCCTCTCAGGTTTCAATCCGTTTGCGCC 455
Query 299 GCCAAGTAAAGGTAGTCTTCATATGAACAGTGGGAATGATAGAGCTGCTGGCGAATCACC 358
||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 456 GCCGGGTAAAGGTAGTCTTCATATGAACAGTGGGAATGATAGAGATGCTGGCCAATCACC 515
Query 359 TGGGGATAAATGTTTCGTCTTTGGAGCTACTGGGAACAGTTCTGGTGCAAAAGCTAGTCC 418
||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 516 TGGGGATAAATGTTTTGTCTTTGGAGCTAGTGGGAACAGTTCTGGTGCAAAATCTAGTCC 575
Query 419 AGGTAATGCCACAATAGCTTCTTTTTCTGATGAAGACGAGTTTAGTACACCTATAGGGGA 478
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 576 AGGCAATGCCACAATAGCTTCTTTGTCTGATGAAGAGGAGTTTAGTACACCTATAGGGGA 635
Query 479 CTCTGAGTTGGATTCGGAATCCATTAAAGACCATTCACATGGAGTTATGGGAAAGGTAGA 538
|||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||
Sbjct 636 CTCTGAGTTGGATTCGGAATCCATTAAAGAACATTCAAATGGAGTTAGGGGAAAGGTTGA 695
Query 539 TAATGATCAGGAAAACATCAGACCATGTAGTGAGAGCACAACTTGTGATGCGACAAATGG 598
|||||||| ||||||||||||||| |||||||||||||||| || |||||| ||||||||
Sbjct 696 TAATGATCGGGAAAACATCAGACCGTGTAGTGAGAGCACAATTTTTGATGCCACAAATGG 755
Query 599 AGTTAAGCTTGATCGTGGTGTAAACGGAAGCTGGAAAAGTGTTGAGAATCCAGATGCTGT 658
| ||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 756 ATTTAGGTTTGATGGTGGTGTTAACGGAAGCTGGAAAAGTGTTGAGAATCCAGATGCTGT 815
Query 659 CAAGGAGTTTTTTCGAAGACAGTATGACATGGACAAGAAATCAGCGAGTAAATCTTGCAG 718
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||
Sbjct 816 CAAGGAGTTTTTTCGAAGACAGAATGGCATGGACAAGGCATCAGCGAGTAAATCTTGTAG 875
Query 719 CAAGTCTAACAGTGTACAATATGCTGATGGTAAAACTGTCGATCATAGGGATGGTCCTGA 778
||||||||||||||||||||||||| ||||||||| || | |||||| ||||||
Sbjct 876 CAAGTCTAACAGTGTACAATATGCTCATGGTAAAA------AT-A--GGGATGATCCTGA 926
Query 779 ATTGAACCTGCTTGCTGACATGGAGAAGCTTAATATCAGTGATTCCAGAGTTCATGGGGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 927 ATTGAACCTGCTTGCTGACATGGAGAAGCTTAATATCAGTGATTCCAGAGTTCATGGTGG 986
Query 839 TAGCGACTATGAGGAAGCAAGCAAATCTAATAACACACCTGTATTTACTTTTAGTAGCTT 898
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 987 CAGCGACTATGAGGAAGCAAGCAAATCCAATAAGACACCTGTATTTACTTTTAGTAGCTT 1046
Query 899 TGGAAAGGTTGATCCTATATGTAAAGAAGGTGCGTCGACATCA-AGGCCATACTCTTTTA 957
|||||||||||||||||||||||||||||||||| |||||||| || |||||||| || |
Sbjct 1047 TGGAAAGGTTGATCCTATATGTAAAGAAGGTGCGGCGACATCAGAG-CCATACTCGTTCA 1105
Query 958 GTTCCAATGGTTTTCACCAAAGTAATAATGCAG-CAGATGAAAAACCCACTTCTCATTCC 1016
|||||||||||||||| |||||||||||||| | | | |||||| ||||||| |||||||
Sbjct 1106 GTTCCAATGGTTTTCAGCAAAGTAATAATGC-GTCGGGTGAAAACCCCACTTTTCATTCC 1164
Query 1017 AAGACCACCAACGTAAACAACTTAACAAACACTAGCCTTGGTACAAAAACATCCTTTGAT 1076
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 1165 CAGACCACCTACGGAAACAACTTAACAAACACTAGCTTTGCTACAAAAACATTCTTTGAT 1224
Query 1077 GATTTCAAAGTACCTGAATGGGATCCTTCGTTGCTTAAGAGA-AGTCTATTTCCGGAAGT 1135
||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 1225 GATTTCAAAGTACCTGAATGGGATCCTTCGTTGCTTAAG-GACAGTCTGTTTCCAGAAGT 1283
Query 1136 AAACAGAAATCCAGTACTTGCACGAAGTAATCGTTCGTCCAAGGACAAGAGATCAAAGAA 1195
| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AGACAGAAATCCAGTACATGCGCGAAGTAATCGTTCGTCCAAGGACAAGAGATCAAAGAA 1343
Query 1196 AGTCATGGAAAAAATAAAACAGCGTAAGCAAGATCGATGCAACGATCAGACTGCTGAGGG 1255
||| | ||||||||| |||||| || ||| |||||||||||| | ||| |||||||||||
Sbjct 1344 AGTTAAGGAAAAAATGAAACAGGGTGAGCCAGATCGATGCAATGGTCAAACTGCTGAGGG 1403
Query 1256 AATTGAGGCTCAGGAAAAACTCAATTCCCCTGGATATTGCTCACCCATGGATTATTCTCC 1315
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 AATTGAGGCTCAAGAAAAACTCAATTCCCCTGGATATTGCTCACCCATGGATTATTCTCC 1463
Query 1316 TTATCAAGGTGAGACAGCCAGCAATCAACTTCCAACAGAAACTCCTCTGACACCCTCACA 1375
|||||||||||| | | | ||||||||| |||||||||||||||| ||| |||| |||||
Sbjct 1464 TTATCAAGGTGACAAAACGAGCAATCAATTTCCAACAGAAACTCCCCTGGCACCATCACA 1523
Query 1376 TTCAAGAGAAC 1386
|||||||||||
Sbjct 1524 TTCAAGAGAAC 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166403749931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5