BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934986
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41530.1 | Symbols: ATSFGH, SFGH | S-formylglutathione hydro... 1487 0.0
> AT2G41530.1 | Symbols: ATSFGH, SFGH | S-formylglutathione hydrolase
| chr2:17323495-17325618 REVERSE LENGTH=1204
Length=1204
Score = 1487 bits (805), Expect = 0.0
Identities = 867/898 (97%), Gaps = 0/898 (0%)
Strand=Plus/Plus
Query 1 TGAGTGAGATAGAGAGAGTGATAATGGAGAGTGGACTAAGAGAGATCGGGAGCACGAAGA 60
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 166 TGAGTGAGATAGAGAGAGTGATAATGGCGAGTGGACTAAGCGAGATCGGGAGCACGAAGA 225
Query 61 TGTTCGATGGCTACAACAAAAGATACAAACACTACAATGAGACACTCGGATGTTCCATGA 120
||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 226 TGTTCGATGGCTACAACAAAAGATACAAACACTTCAGTGAGACACTTGGATGTTCCATGA 285
Query 121 CCTTTTCCATCTACTTCCCTCCTTCTGCTTCATCTTCCCATAAATCTCCTGTGCTTTACT 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 286 CCTTTTCCATCTACTTCCCTCCTTCTGCTTCTTCTTCCCATAAATCTCCTGTGCTTTACT 345
Query 181 GGCTTTCTGGCCTCACCTGCACGGACGAGAACTTCTTTATCAAATCTGGGGCTCAACGTG 240
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 346 GGCTTTCTGGCCTCACCTGCACGGACGAGAACTTCATTATCAAATCAGGAGCTCAACGTG 405
Query 241 CTGCTTCGACTCACGGCATTGCTCTTGTTGCTCCAGACACTTCTCCAAGAGGACTAAATG 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CTGCTTCTACTCACGGCATTGCTCTTGTTGCTCCAGACACTTCTCCAAGAGGACTAAATG 465
Query 301 TTGAAGGGGAAGCAGACAGTTACGACCTCGGTATAGGAGCTGGATTCTACCTCAATGCTA 360
|||||||||| ||||||||||||||| | ||| ||||||| |||||||||||||||||||
Sbjct 466 TTGAAGGGGAGGCAGACAGTTACGACTTTGGTGTAGGAGCCGGATTCTACCTCAATGCTA 525
Query 361 CTCAGGAAAAGTGGAAAAACTGGCGTATGTATGACTATGTTGTCAAAGAGTTGCCAAAAC 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CTCAGGAAAAGTGGAAGAACTGGCGTATGTATGACTATGTTGTCAAAGAGTTGCCAAAAC 585
Query 421 TCCTGAGTGAAAACTTTTCTCAGCTTGACACAACAAAAGCATCTATATCTGGACACTCCA 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TCCTGAGTGAAAACTTTTCCCAGCTTGACACAACAAAAGCATCTATATCTGGACACTCCA 645
Query 481 TGGGTGGACATGGAGCTCTTACTATATACCTGAAGAACCTCGATAAATACAAGTCTGTGT 540
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 646 TGGGTGGACATGGAGCTCTTACTATATACCTGAGGAACCTCGATAAATACAAGTCTGTAT 705
Query 541 CTGCGTTTGCACCAATTGCCAATCCCATAAATTGTGCATGGGGACAGAAGGCATTCACCA 600
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CTGCGTTTGCACCAATCACGAATCCCATAAATTGTGCATGGGGACAGAAGGCATTCACCA 765
Query 601 ATTATCTAGGTGACAACAAGGCTGCTTGGGAGGAATACGATGCCACTTGTCTTATTACAA 660
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 766 ATTATCTAGGTGACAACAAAGCTGCTTGGGAGGAATACGATGCCACTTGTCTTATTTCAA 825
Query 661 AGTTCAACAATCTGTCTGCAACAATTCTAATTGATCAGGGAGAAAACGACCAGTTCTACC 720
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 AGTACAACAATCTTTCTGCAACAATTCTAATTGATCAGGGAGAAAACGACCAGTTCTACC 885
Query 721 CTGATCAGTTATTGCCCAGCAATTTTGAGGAGGCGTGCAAGAAAGTGAATGCACCGCTCT 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 886 CTGATCAGTTATTGCCCAGCAAGTTTGAGGAGGCGTGCAAGAAAGTGAATGCACCGCTCT 945
Query 781 TACTGCGCCTCCAGCCAGGATACGACCACTCCTACTATTTCATTGCCACCTTCATCGAAG 840
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TATTGCGCCTCCATCCAGGATACGACCACTCCTACTATTTCATTGCCACCTTCATCGAAG 1005
Query 841 ACCACATTAGTCACCATGCTCAAGCCCTTAAGCTCTAGCTCACTTCATCTGCTTGGAA 898
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1006 ACCACATTAGTCACCATGCTCAAGCCCTTGAGCTATAGCTCACTTCATCTGCTTGGAA 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5