BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935008

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41770.1 | Symbols:  | Protein of unknown function (DUF288) ...   407    3e-113
  AT3G57420.1 | Symbols:  | Protein of unknown function (DUF288) ...   110    8e-24 


> AT2G41770.1 | Symbols:  | Protein of unknown function (DUF288) 
| chr2:17424358-17427282 REVERSE LENGTH=2747
Length=2747

 Score =  407 bits (220),  Expect = 3e-113
 Identities = 232/238 (97%), Gaps = 0/238 (0%)
 Strand=Plus/Plus

Query  7    GCTTTTTTGATCCGATGTTGGTTCAGGATCGTGCGGCGTCTTCTCCTGCCAAGCCGCCGA  66
            ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  227  GCTTTATTGATCCAATGTTGGTTCAGGATCGTGCGGCGCCTTCTCCTGCCAAGCCGCCGA  286

Query  67   AATCTCAGATCAGAGAACTACCTACTCATCAACAGATCCGACGACGATTCAGTGAACCCA  126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  287  AATCTCAGATCAGAGAACTACCTACTCATCAACAGATCCGACGACGATTCAGTGAACCCA  346

Query  127  AAAACCTAGATTTCTCGACTTGGTTCTCTGAGAATCTCTCCAGAATTGCTGTCTTCTCTC  186
            ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  347  AAAACTTAGATTTCTCGACTTGGTTCTCTGAGAATCTCTCTAGAATTGCTGTCTTCTCTC  406

Query  187  TCTTAATCGTCACCATAGTAGCTCTCTTCTTCCTCTACAACACCACCGACACTGCTTC  244
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  407  TCTTAATCGTCACCATAGTAGCTTTCTTCTTCCTCTACAACACCACCGACACTGCTTC  464


> AT3G57420.1 | Symbols:  | Protein of unknown function (DUF288) 
| chr3:21252419-21255276 REVERSE LENGTH=2645
Length=2645

 Score =  110 bits (59),  Expect = 8e-24
 Identities = 114/139 (82%), Gaps = 10/139 (7%)
 Strand=Plus/Plus

Query  111  CGATTCAG-TGAACCCAAAAACCTAGATTTCTCGAC-TTGGTTCTCTGAGAATCTCTCCA  168
            |||||| | ||||||||||| ||||||||||||  | | |||| || || ||| ||| ||
Sbjct  231  CGATTC-GCTGAACCCAAAATCCTAGATTTCTCTTCATGGGTT-TCCGACAATGTCTACA  288

Query  169  GAATTGCT-GTCTTC-TCTCTCTTAATCGTCACCATAG-TAGCTCTCTTCTTCCTCTACA  225
            |||| | |  || || || ||||| ||||||||| | | | ||| |||||||||||||||
Sbjct  289  GAATCG-TAATCATCTTC-CTCTTCATCGTCACCGTCGCT-GCTTTCTTCTTCCTCTACA  345

Query  226  ACACCACCGACACTGCTTC  244
            |||||||||||||||||||
Sbjct  346  ACACCACCGACACTGCTTC  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11058904780


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5