BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935009
Length=409
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41770.1 | Symbols: | Protein of unknown function (DUF288) ... 555 2e-157
AT3G57420.1 | Symbols: | Protein of unknown function (DUF288) ... 405 2e-112
> AT2G41770.1 | Symbols: | Protein of unknown function (DUF288)
| chr2:17424358-17427282 REVERSE LENGTH=2747
Length=2747
Score = 555 bits (300), Expect = 2e-157
Identities = 342/362 (94%), Gaps = 3/362 (1%)
Strand=Plus/Plus
Query 28 GTTCTA-ATCACTTGCCTTATGATTCTTTCGTGCGGAAGAGTGTTGGTTACTTGTTCGCG 86
||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 760 GTTTTAGATCACTTGCCTTATGATTCTTTCGTAAGGAAGAGTGTTGGTTACTTGTTCGCG 819
Query 87 ATACAGCACGGTGCGAAGAAGATCTACGATGCGGATGATCGTGGTGAAGTGATTGATGGA 146
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 820 ATCCAGCACGGTGCGAAGAAGATCTATGATGCTGATGATCGTGGTGAAGTGATTGATGGA 879
Query 147 GATCTAGGGAAGCATTTTGATGTTGAGTTAGTTGGTGTAGATTCTAAGCAACAACCTATT 206
|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 880 GATCTAGGCAAGCATTTTGATGTTGAGTTAGTTGGTCTAGATTCTAAGCAAGAACCGATT 939
Query 207 TTGCAGTATAGTCATGAGAACTCCAATAGGACTGTGGTTAATCCTTATATTCATTTCGGG 266
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 940 TTGCAGTATAGTCATGAGAACCCCAATAGGACTGTGGTTAATCCTTATATTCATTTCGGG 999
Query 267 CAACACTCGGTTTGGCCTAGAGGATTGCCATTAGAGAATGTAGGTGAGATCAATCATGAG 326
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1000 CAACGTTCCGTTTGGCCTAGAGGTTTGCCATTAGAGAATGTAGGTGAGATCAATCATGAG 1059
Query 327 GAGTATTACACTGAGGTTTTTGGTGGTACGCAGTTTATACAGCA-GGGAATTTCTAATGG 385
|||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||
Sbjct 1060 GAGTATTACACTGAGGTTTTTGGTGGTAAGCAGTTTATACAGCAAGGGA-TTTCTAACGG 1118
Query 386 TT 387
||
Sbjct 1119 TT 1120
Score = 62.1 bits (33), Expect = 4e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1 AGCTTGGTGAAGATTCGTGGATGGCAGGTTCTA 33
|||||||||||||||||||||||||||||||||
Sbjct 637 AGCTTGGTGAAGATTCGTGGATGGCAGGTTCTA 669
> AT3G57420.1 | Symbols: | Protein of unknown function (DUF288)
| chr3:21252419-21255276 REVERSE LENGTH=2645
Length=2645
Score = 405 bits (219), Expect = 2e-112
Identities = 312/357 (87%), Gaps = 6/357 (2%)
Strand=Plus/Plus
Query 34 ATCACTTGCCTTATGATTCTTTCGTGCGGAAGAGTGTTGGTTACTTGTTCGCGATACAGC 93
|||| |||||||||||||| ||||| || || ||||| ||||||||||| ||||| ||||
Sbjct 667 ATCATTTGCCTTATGATTCCTTCGTACGCAAAAGTGTCGGTTACTTGTTTGCGATCCAGC 726
Query 94 ACGGTGCGAAGAAGATCTACGATGCGGATGATCGTGGTGAAGTGATTGATGGAGATCTAG 153
| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 727 ATGGTGCAAAGAAGATCTTTGATGCAGATGATCGTGGTGAAGTGATTGATGGAGATCTTG 786
Query 154 GGAAGCATTTTGATGTTGAGTTAGTTGGTGTAGATTCTAAGCAACAACCTATTTTGCAGT 213
|||| ||||||||||| ||||||||||| | ||| ||| |||| |||| || || ||||
Sbjct 787 GGAAACATTTTGATGTAGAGTTAGTTGGAGAAGACGCTAGGCAAGAACCAATCTTACAGT 846
Query 214 ATAGTCATGAGAACTCC-AATAGGACTGTGGTTAATCCTTATATTCATTTCGGGCAAC-A 271
||||||| || ||| || ||| | |||||||| ||||| ||||| ||||||||||||| |
Sbjct 847 ATAGTCACGAAAAC-CCGAATCGAACTGTGGTGAATCCGTATATCCATTTCGGGCAACGA 905
Query 272 CTCGGTTTGGCCTAGAGGATTGCCATTAGAGAATGTAGGTGAGATCAATCATGAGGAGTA 331
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 906 -TCGGTTTGGCCTAGAGGTTTGCCATTAGAGAATGTAGGTGAGATCAATCATGAAGAGTA 964
Query 332 TTACACTGAGGTTTTTGGTGGTACGCAGTTTATACAGCA-GGGAATTTCTAATGGTT 387
||||||||||||||||||||||| |||||||| ||||| |||| |||| || ||||
Sbjct 965 TTACACTGAGGTTTTTGGTGGTAAACAGTTTATTCAGCAAGGGA-TTTCCAACGGTT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19353083365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5