BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935010
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41770.1 | Symbols: | Protein of unknown function (DUF288) ... 809 0.0
AT3G57420.1 | Symbols: | Protein of unknown function (DUF288) ... 200 2e-50
> AT2G41770.1 | Symbols: | Protein of unknown function (DUF288)
| chr2:17424358-17427282 REVERSE LENGTH=2747
Length=2747
Score = 809 bits (438), Expect = 0.0
Identities = 540/585 (92%), Gaps = 23/585 (4%)
Strand=Plus/Plus
Query 164 GGTTTTCGACAGAACAGGATTTGAAATTCACAGCTGCTTGGCTTCAGGATTTGATTGCTG 223
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GGTTTTGGACAGAACAGGATTTGAAATTCACAGCTGCTTGGCTTCAGGATTTGATTGCTG 1612
Query 224 TTGGGTACCAACAACCGAGATTGATGTCGCTGGAACTGGATCGCCCGCGAGCAAGTTTCG 283
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1613 TTGGGTACCAACAACCGAGATTGATGTCGCTGGAATTGGATCGCCCGCGAGCAAGTATCG 1672
Query 284 GTCATGGAGATAGAAGAGAGTTTGTTCCAAGGAATTTGCCTTCGGTTCATCTCGGGGTTG 343
||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1673 GTCATGGAGATAGAAAAGAGTTTGTTCCAAGGAAGTTACCTTCGGTTCATCTCGGGGTTG 1732
Query 344 AGGAGACCGGCACAGTGAGCACTGAAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTG 403
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 AGGAGACTGGCACAGTGAGCACTGAAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTG 1792
Query 404 GGAATGTTTTACTTGTTGTGTTTTGTAACGGTCCCGTTGAACGCACCGCACTCGAGTGGA 463
|||||||| | || ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1793 GGAATGTTGTGCTGGTTATGTTTTGTAACGGTCCCGTTGAACGTACCGCACTCGAGTGGA 1852
Query 464 GGTTACTTTACGGCCGCATATTCAAAACTGTTGTGATA-TTGTCTTCTCAGAAGAACTCA 522
|||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1853 GGTTACTTTATGGCCGGATATTCAAAACTGTTGTGATACTT-TCTTCTCAGAAGAACTCA 1911
Query 523 GATCTCTATGTCGAAGAAGCCAAACTCGATCACATATACAAGCATCTACCGAAGATATTT 582
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1912 GATCTCTATGTAGAAGAAGCCAAACTCGATCACATTTACAAGCATCTACCAAAGATATTT 1971
Query 583 GATAGATACAGCAGCGCAGAAGGATTTTTGTTTGTTGAAGATGATACAATTCTCAATTAC 642
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1972 GATCGATACAGCAGCGCAGAAGGATTTTTGTTTGTTGAAGATGATACAGTTCTCAATTAC 2031
Query 643 TGGAATCTA----A-GAT------T-T--G----GG-CTACAGAGACAAGGTATCAAAGT 683
||||||||| | | | | | | || ||||||| ||||||||||||||
Sbjct 2032 TGGAATCTACTTCAAGCTGACAAATCTAAGATTTGGACTACAGA--CAAGGTATCAAAGT 2089
Query 684 CATGGACGTCAGTGAAACCGACCGGGAACTCTGATTGGTTTTCTG 728
| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2090 CTTGGACATCAGTGAAACCGACCGGGAACTCTGATTGGTTTTCTG 2134
Score = 246 bits (133), Expect = 2e-64
Identities = 143/148 (97%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 1 TCGTCGGCCTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTG 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TCGTCAGCCTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTG 1323
Query 61 TTGAGAGGTTACTGGGGACAAAGGCTTCTGTGGGAGCTTGGTGGTTATGTTGCTGTTTAT 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1324 CTGAGAGGTTACTGGGGACAAAGGCTTTTGTGGGAGCTTGGTGGTTATGTTGCTGTTTAT 1383
Query 121 CCACCTACGGCTCACCGATTTGATAGAA 148
|||||||| |||||||| ||||||||||
Sbjct 1384 CCACCTACAGCTCACCGGTTTGATAGAA 1411
> AT3G57420.1 | Symbols: | Protein of unknown function (DUF288)
| chr3:21252419-21255276 REVERSE LENGTH=2645
Length=2645
Score = 200 bits (108), Expect = 2e-50
Identities = 129/139 (93%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 10 TTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTG-TTGAGAGG 68
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1173 TTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCAGATGTGATT-AGAGG 1231
Query 69 TTACTGGGGACAAAGGCTTCTGTGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCTAC 128
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1232 TTACTGGGGACAAAGGCTTTTATGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCAAC 1291
Query 129 GGCTCACCGATTTGATAGA 147
| |||||| | |||||||
Sbjct 1292 TGTTCACCGGTATGATAGA 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5