BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935015
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41451.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 832 0.0
AT3G57200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 431 6e-120
AT3G60950.1 | Symbols: | C2 calcium/lipid-binding endonuclease... 285 5e-76
AT3G61030.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 285 5e-76
> AT2G41451.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G57200.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr2:17282899-17285361 FORWARD LENGTH=1511
Length=1511
Score = 832 bits (450), Expect = 0.0
Identities = 499/523 (95%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 258 TATAAAGAGGCAACTCGTGGCAATCCGAACTATTTTCTAAGCTATGCAAATGGGAAATCC 317
|||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 896 TATAAAGAGGCAACTCGTGGCAATCCAAACTATTTTCTTACCTATGCAAATGGGAAATCC 955
Query 318 GCCGCTCGGATTCAAGACCATCTTCAGCCCAATGGTGCTCATCGATGGCTCAACTACATG 377
|| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |
Sbjct 956 GCTGCTCGGATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGCTGGCACAACTACAAG 1015
Query 378 AAGTACCCAAACATCATGGAACTAGGCGAAGCTGCGATTCTTCACTACACTTACTCGAAA 437
| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1016 ACGTATCCAAACATCAAGGAACTAGACGAAGCTGCGATTCTTCACTACACTTACTCGAAA 1075
Query 438 TTCTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACTAAAGAAGATGTC 497
|| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1076 TTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACAAAAAAAGATGTC 1135
Query 498 AAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAACT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAACT 1195
Query 558 TCAGAGGAAATGCTCCAATGGTACAGAGAAAGAGTTGTATGGACTGACGACAATTTGATC 617
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1196 TCAGAGGAAATGCTCCAATGGTACAGAGAAAGAGTTGTATGGACTGACGATAATTTGATC 1255
Query 618 CTAAAACTTGTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGTTATAATCCAA 677
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CTAAAACTTCTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGTTATAATCCAA 1315
Query 678 GAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAAATTCAGCTCACATGTCTCTCTCA 737
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1316 GAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAACTTCAGCTCATATGTCTCTCTCA 1375
Query 738 AGGAATAGAAGCAACTCTTCAACCTCAAA-AATTACTAGAGAA 779
| |||||||||||||||||||||||||| || |||||| |||
Sbjct 1376 AAGAATAGAAGCAACTCTTCAACCTCAAGCAACTACTAG-GAA 1417
Score = 296 bits (160), Expect = 2e-79
Identities = 195/212 (92%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 39 CAATCGTTTCCTTATCTCCGAGATTGGAAGCTTGATCACAAGCCTGATCTTAAACCTAAG 98
||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 287 CAAGCGTTTCCTTATCTCCGAGATTTGAAGCTTGATCACAAGCCCGATCTTAAACCTAGG 346
Query 99 ATATGTATAAGGACGAGCACTTCTGCTGGATTAGAGCCGACATTGCCATGGAT-TGTCTA 157
|||||||||| |||||||||||||||||| ||||||| ||||||||||||||| | ||||
Sbjct 347 ATATGTATAACGACGAGCACTTCTGCTGGGTTAGAGCAGACATTGCCATGGATAT-TCTA 405
Query 158 TCACAAGGTCATTGGAGTTTCCACTTTTTATCTATTTGTTGAAGGCACTGCTACTTCCCC 217
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 406 TCACAAGGTCATTGGAGTTGAAACTTTTTATCTATTTGTTGAAGGCACTGCTGCTTCCCC 465
Query 218 AAATGTGTCTCGAGTTTTTGAGACCATCCCTG 249
||| || ||||||||||| ||||| |||||||
Sbjct 466 AAACGTTTCTCGAGTTTTGGAGACAATCCCTG 497
Score = 117 bits (63), Expect = 2e-25
Identities = 104/122 (85%), Gaps = 9/122 (7%)
Strand=Plus/Plus
Query 784 CTCAAGCAACTACTAGGAAGGTGTTGGAGTTTGATCTTGAGGATCTTGATGATGAATCTC 843
||||||||||||||||||||||||||||||||||||||| | | | | |||||||
Sbjct 1399 CTCAAGCAACTACTAGGAAGGTGTTGGAGTTTGATCTTG----T-T-G--G-TGAATCTT 1449
Query 844 CATCAGCATCACCTATACCACCGAAATCATCTCCAGGATTGGAAACAATCCAAAATGTTT 903
| ||| |||| | |||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 1450 AAGCAGTATCAGCGATACCACCGAAAGCATCTCCAGGCTTGGAAAAAATCCAAAATGTTT 1509
Query 904 AA 905
||
Sbjct 1510 AA 1511
> AT3G57200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G41451.1);
Has 94 Blast hits to 94 proteins in 31 species: Archae - 0;
Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21169265-21172316
FORWARD LENGTH=1906
Length=1906
Score = 431 bits (233), Expect = 6e-120
Identities = 527/662 (80%), Gaps = 48/662 (7%)
Strand=Plus/Plus
Query 258 TATAAAGAGGCAACTCGTGGCAATCCGAACTATTTTC-TAAGCTATGCAAATGGGAAATC 316
|||||||| || |||||||| ||||| ||||| |||| ||| ||||| |||||||||| |
Sbjct 1043 TATAAAGATGCCACTCGTGGAAATCCAAACTA-TTTCTTAACCTATGGAAATGGGAAAGC 1101
Query 317 CGCCGCTCG-GATTCAAGACCATCTTCAG-CCCAATGGTGCTCATCGATGGCTCAACTAC 374
|| || || | |||| |||||||||| | |||||||||||||||||||||| |||||||
Sbjct 1102 TGCTGCCCGTG-TTCAGGACCATCTTC-GTCCCAATGGTGCTCATCGATGGCACAACTAC 1159
Query 375 ATG-AAGTA-CCCAAACATCATGG---AACTAGGCGAAGCTG-CGATTCTTCACTACACT 428
| | ||| | || || || | || |||| | ||||||| || | || ||||| |||
Sbjct 1160 A-GAAAG-AGTCC-AA-ATGA-GGTCAAACTTGAAGAAGCTGCCG-TGCTGCACTATACT 1213
Query 429 TACT-CGAAATTCTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACTAA 487
|| | | | ||| |||||||||||||||||||||||||| |||||||| || || |||||
Sbjct 1214 TA-TCCCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCACTAA 1272
Query 488 AGAAGATGTCAAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTC 547
|| |||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct 1273 AGTGGATGTCAAGAGATGTTTCATGCTAGAGTTTGACAGAGCTGCATTTATTATTGCTTC 1332
Query 548 AACTTCAACTTCAGAGGAAATGCTCCAATGGTACAGAGAAAG-A-GTTGTATGGACTGAC 605
||| | | ||||||||||||||| ||||||||||||| || | ||||| ||||||||
Sbjct 1333 AACAGCGAGTTCAGAGGAAATGCTGCAATGGTACAGAG--AGCATGTTGTGTGGACTGAT 1390
Query 606 GACAATTTGATCCTAAAACTTGTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATG 665
|| || |||| | ||||| ||||||| |||||||| || ||||||||||| || |||
Sbjct 1391 GAAAAATTGAAGTTGAAACTCCTTAGGAAGGGAATTCTAACCCGCATTTATGCTCCCATG 1450
Query 666 GTTATAATCCAAGAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAAATT-CAGCTCA 724
|||||||||||||||||||||||||| |||||||| ||||| ||||||| | |||||||
Sbjct 1451 GTTATAATCCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAA-TCGCAGCTCA 1509
Query 725 CATGTCTCTCT-C-AAGGAA-TAGAAGCAACT-CT--T-CAACCTCAAAAATTACTAGAG 777
|| ||||| || | ||| || | ||||| || | | || ||| ||||| |||
Sbjct 1510 CAAGTCTC-CTTCGAAG-AACTCTT--CAACTGCTGATTCGACATCAGGCATTACCCGAG 1565
Query 778 AATCATCTCAAGCAACTACTAGGA--AGG-TGTTGGAGTTTGATCTTGAGGATCTTGATG 834
|||||||||| | |||| || || ||| ||||||| || ||||||| | | | || |
Sbjct 1566 AATCATCTCAGGAAACTGGTAAGAGGAGGGTGTTGGAATTCCATCTTGATG-T-T-GACG 1622
Query 835 ATGAATCTCCATCAGCATCACCTATACCACCGA-AATCATCTCCAGGATTGGAAACAATC 893
|||||| ||| ||||||| | ||||||| | |||| ||||||| |||||| ||| |
Sbjct 1623 GTGAATC-CCA--AGCATCAGCGGTACCACC-ACAATCGCCTCCAGGCTTGGAAGCAACC 1678
Query 894 CA 895
||
Sbjct 1679 CA 1680
> AT3G60950.1 | Symbols: | C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase
| chr3:22524475-22530306 FORWARD
LENGTH=2420
Length=2420
Score = 285 bits (154), Expect = 5e-76
Identities = 186/201 (93%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 332 AGACCATC-TTCAGCCCAATGGTGCTCATCGATGGCTCAACTACATGAAGTACCCAAACA 390
|||||||| ||| ||| |||||||||||||| || | |||||||||||||||||||||||
Sbjct 890 AGACCATCTTTCGGCCTAATGGTGCTCATCGCTGTCACAACTACATGAAGTACCCAAACA 949
Query 391 TCATGGAACTAGGCGAAGCTGCGATTCTTCACTACACTTACTCGAAATTCTCAGATCTTA 450
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 950 TCATGAAACTAGGCGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAGATCTTA 1009
Query 451 CTTCAAGACGTGATCGATGTGGCTGCAAACCAACTA-AAGAAGATGTCAAGAGATGTTTC 509
|| ||||||||||||||||| |||||||||||| | |||| |||||||||| |||||||
Sbjct 1010 CTGCAAGACGTGATCGATGTTGCTGCAAACCAAA-AGAAGAGGATGTCAAGATATGTTTC 1068
Query 510 ATGCTAGACTTTGACAGAGCC 530
|||||||||||||||||||||
Sbjct 1069 ATGCTAGACTTTGACAGAGCC 1089
> AT3G61030.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:22585655-22590853 FORWARD LENGTH=1843
Length=1843
Score = 285 bits (154), Expect = 5e-76
Identities = 186/201 (93%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 332 AGACCATC-TTCAGCCCAATGGTGCTCATCGATGGCTCAACTACATGAAGTACCCAAACA 390
|||||||| ||| ||| |||||||||||||| || | |||||||||||||||||||||||
Sbjct 869 AGACCATCTTTCGGCCTAATGGTGCTCATCGCTGTCACAACTACATGAAGTACCCAAACA 928
Query 391 TCATGGAACTAGGCGAAGCTGCGATTCTTCACTACACTTACTCGAAATTCTCAGATCTTA 450
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 929 TCATGAAACTAGGCGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAGATCTTA 988
Query 451 CTTCAAGACGTGATCGATGTGGCTGCAAACCAACTA-AAGAAGATGTCAAGAGATGTTTC 509
|| ||||||||||||||||| |||||||||||| | |||| |||||||||| |||||||
Sbjct 989 CTGCAAGACGTGATCGATGTTGCTGCAAACCAAA-AGAAGAGGATGTCAAGATATGTTTC 1047
Query 510 ATGCTAGACTTTGACAGAGCC 530
|||||||||||||||||||||
Sbjct 1048 ATGCTAGACTTTGACAGAGCC 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5