BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935018
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41670.1 | Symbols: | P-loop containing nucleoside triphosp... 2026 0.0
> AT2G41670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17374083-17376238
FORWARD LENGTH=1257
Length=1257
Score = 2026 bits (1097), Expect = 0.0
Identities = 1167/1201 (97%), Gaps = 4/1201 (0%)
Strand=Plus/Plus
Query 1 GCTGTTTGTTGCCGGAGAAAATGGTGATGATGTTGAAGAAGACAGTGAAGAAAGGTTTAA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 GCTG-TTGTTGCCGGAGAAAATGGTGATGATGTTGAAGAAGACAGTGAAGAAAGGTTTAA 75
Query 61 TCGGCGGAATGAGCTTCGCTAAAGACGCCGGAAAAATCAATTGGTTTCCCGGTCATATGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TCGGCGGAATGAGCTTCGCTAAAGACGCCGGAAAAATCAATTGGTTTCCCGGTCATATGG 135
Query 121 CTGCAGCAACTCGCGCCATTCGCAACCGCCTCAAGCTCTCCGACCTCGTTATCGAAGTTC 180
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 136 CTGCAGCTACTCGCGCCATTCGTAACCGCCTCAAGCTCTCCGATCTCGTTATCGAAGTTC 195
Query 181 GCGATGCTCGTATTCCTCTGTCATCGGCGAACGAGGATCTACAATCCCAAATGTCAGCTA 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 196 GCGATGCTCGTATTCCTCTGTCATCGGCGAACGAAGATCTACAATCCCAAATGTCAGCTA 255
Query 241 AGAGACGTATCATTGCTCTGAATAAGAAAGATTTAGCAAACCCTAATGTTCTCAATAAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AGAGACGTATCATTGCTCTGAATAAGAAAGATTTAGCAAACCCTAATGTTCTCAATAAAT 315
Query 301 GGACTCGTCATTTCGAATCCAGCAAGCAAGATTGTATTGCCATTAATGCTCATAGCAGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GGACTCGTCATTTCGAATCCAGCAAGCAAGATTGTATTGCCATTAATGCTCATAGCAGAA 375
Query 361 GCTCTGTCATGAAGCTTCTTGATCTCGTGGAGTTGAAGCTCAAGGAAGTGATTGCTAGGG 420
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 376 GCTCTGTCATGAAGCTGCTTGATCTCGTGGAGTTGAAGCTCAAAGAAGTGATTGCTAGGG 435
Query 421 AGCCTACTTTACTTGTAATGGTGGTTGGTGTCCCCAATGTTGGAAAATCTGCACTCATTA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 436 AGCCTACTTTACTTGTAATGGTGGTTGGTGTCCCCAATGTTGGAAAATCTGCGCTCATTA 495
Query 481 ATTCGGTCCATCAAATCGCAGCAGCTCGCTTTCCTGTGCAGGAGAGATTAAAGAGAGCTA 540
| ||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 496 ACTCGATCCATCAAATTGCAGCAGCTCGTTTTCCGGTGCAGGAGAGATTAAAGAGAGCTA 555
Query 541 CGGTTGGTCCATTGCCTGGTGTAACACAAGATATTGCTGGTTTCAAGATTGCTCATCGAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 CGGTTGGTCCATTGCCTGGTGTAACACAAGATATTGCTGGTTTCAAGATTGCTCATCGAC 615
Query 601 CTAGCATATATGTTCTAGACTCCCCTGGTGTGTTGGTACCAAGTATTCCTGATATCGAAA 660
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 616 CTAGTATATATGTTCTAGACTCCCCTGGTGTGTTGGTTCCAAGTATCCCTGATATCGAAA 675
Query 661 CCGGTTTAAAGCTTGCTCTTTCAGGGTCCGTTAAAGATTCAGTAGTGGGTGAAGAGCGGA 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CCGGTTTGAAGCTTGCTCTTTCAGGGTCCGTTAAAGATTCAGTAGTGGGTGAAGAGCGGA 735
Query 721 TTGCACAATACTTTCTAGCTATTCTAAACATTCGAGGGACTCCTCTTCATTGGAAGTACT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TTGCACAATACTTTCTAGCTATTCTAAACATTCGAGGGACTCCTCTTCATTGGAAGTACT 795
Query 781 TAGTTGAGGGAAGAAACGAAGGGCCTCATGCAGACTGCATCGATAAACCAAGCTATAACT 840
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 796 TAGTTGAGGGAATAAACGAAGGGCCTCATGCAGACTGCATCGATAAGCCAAGCTATAACT 855
Query 841 TAAAGGATCTTCGACACCAGAGAACCAAACAGCCAGATTCATCTGCTCTGCACTATGTCG 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 856 TAAAGGATCTTCGACACCAGAGAACCAAACAACCAGATTCATCTGCTCTGCACTATGTCG 915
Query 901 GGGATATGATTTCAGAAGTGCAACGATCACTGTATATAACGCTCTCAGAATTTGATGGGG 960
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 916 GGGATATGATTTCAGAAGTGCAACGATCACTGTATATAACACTCTCAGAATTTGATGGGG 975
Query 961 ACACAGAGGATGAGAATGATTTGGAATGTTTGATAGAGCAACAGTTTGAAGTTCTACAGA 1020
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 976 ACACGGAGGATGAGAATGATTTAGAATGTTTGATAGAGCAACAGTTTGAAGTTCTACAAA 1035
Query 1021 AGGCACTGAAGATTCCTCACAAAGCATCCGAAGCAAGGTTAATGGTCTCCAAGAAATTTC 1080
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AGGCATTGAAGATTCCTCACAAAGCATCCGAAGCAAGGTTAATGGTCTCCAAGAAATTTC 1095
Query 1081 TTACTTTGTTTAGGACAGGTAGACTTGGTCCCTTCATCCTTGACGATGTCCCTGAAACTG 1140
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1096 TTACTTTGTTTAGGACAGGTAGACTTGGTCCCTTTATCCTTGACGATGTCCCTGAAACTG 1155
Query 1141 AAACTGACCACCCCAATTTGAGACGGGTAGTAGTTTCGTAAAATAATCTTAAAGCAAATT 1200
|||||||||||||||||| | ||||||||| |||| ||||||| |||||||||||||
Sbjct 1156 AAACTGACCACCCCAATTCAAAACGGGTAGTTGTTTTGTAAAAT---CTTAAAGCAAATT 1212
Query 1201 G 1201
|
Sbjct 1213 G 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5