BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935027
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41750.1 | Symbols: | DTW domain-containing protein | chr2:... 1208 0.0
> AT2G41750.1 | Symbols: | DTW domain-containing protein | chr2:17421644-17422522
REVERSE LENGTH=879
Length=879
Score = 1208 bits (654), Expect = 0.0
Identities = 731/769 (95%), Gaps = 2/769 (0%)
Strand=Plus/Plus
Query 8 GACAGAGCAGTGACGATGGAGGAAGAGCAAGACACGCATCATCGCCGGCAGATCTGCAAC 67
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 1 GACAGAGCAGTGACGATGGAGGACGAGCAAGACGCGCATCATCGCCGGCAGATCTGCGAC 60
Query 68 AACTGCGATCGTCCAAATGCGATTTGTCTCTGCCACGTCTTACCGGCGGATCTAATTCCA 127
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AACTGCGATCGCCCAAATGCGATTTGTCTCTGCCACGTCTTACCAGCGGATCTAATTCCG 120
Query 128 ACGAATACAGAGATCATCATCCTCCACCATCCACACGAGTCACGCCACAAGCTCAACACA 187
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGAATACAGAAATCATCATCCTCCACCATCCACACGAGTCACGCCACAAGCTCAACACC 180
Query 188 ACACCTCTCCTTACCAAATCCTTACGAAACGTCACCAGAATCCCCGCCCGCCGTATCCTC 247
|| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 181 ACTCCTCTCCTTACCAAATCCTTACTAAACGTCACCAGAATCCCCGCCCGCCGTCTCCTC 240
Query 248 CGCCGTCACATCTCCACCGTCGGAGAAACCTCTTC-CCCATCACCACCAACAATCTACCT 306
||||||||||||||||||| ||||| |||| | | |||| |||| ||||||||||||||
Sbjct 241 CGCCGTCACATCTCCACCGCCGGAGGAACCGC-ACTCCCAGCACCGCCAACAATCTACCT 299
Query 307 ATTCCCTTCTTCTCCTTCCTCTCCCGCCGTCACTATATCCGAATTCAAATCCCTAAACCT 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTCCCTTCTTCTCCTTCCTCTCCCGCCGTCACTATATCCGAATTCAAATCCCTAAACCT 359
Query 367 CTTAAACCATCGAGACATCTCAAATCCGCCGCCGCTGAGACTCATCGTATTCGACGCGAC 426
|||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 360 CTTAAACCATCGTGAGATCTCAAATCCCCCGCCGCTGAGACTAATCGTATTCGACGCGAC 419
Query 427 GTGGAAGCACGCGAAGGAGATGGTCAAAGCTAGCGAGGAGGTTTTAAGAGAAGCAGGAGC 486
|||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 420 GTGGAAACACGCGAAGGAGATGGTCAAAGCTAGCGAGGTGGTGTTAAGAGAAGCAGGAGC 479
Query 487 GGTTAGAGTATGTTTGGATACGGAAATAGACGCATCTGTGAGCGGAGGAACCATCTACGA 546
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 480 GGTTAGAGTGTGTTTGGATACGGAAATAGACGCATCAGTGAGTGGAGGAACCATCTACGA 539
Query 547 TTCAGAGCTTGTGCTAAGGAAGGAACCATTCGGAGGATGTGTAACTACGGCGGAGGCAGT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TTCAGAGCTTGTGCTAAGGAAGGAACCATTCGGAGGATGTGTAACTACGGCGGAGGCTGT 599
Query 607 GGCACGGTGCTTAGGAGCCATTGAACCGGACGGTGAAGAAATCGAGAAGAAGCTGATTAG 666
|||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||
Sbjct 600 GGCACGGTGCTTAGGAGCTATTGAACCTGACGGTGAAGAAATAGAGAGGAAGCTGATTAG 659
Query 667 TGTTTTGAAAGAGATGGTTAGATTCCAATCTAAGTACTTGAAGCCCATGAAACCAAGACC 726
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 660 TGTTTTGAAAGAGATGGTTAGATTTCAATCTAAGTACTTGAAGCCTATGAAACCAAGACC 719
Query 727 CAAGTTATTGAAGAAGAGATTTCAGAATCAGCAACCACTTGAACAAGAA 775
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAAGTTATTGAAGAAGAGATTTCAGAATCAGCAACCACTTGAACAAGAA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5