BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935028
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41760.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1083 0.0
> AT2G41760.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161);
Has 201 Blast hits to 201 proteins in 90 species: Archae
- 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30;
Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). |
chr2:17422770-17424371 FORWARD LENGTH=876
Length=876
Score = 1083 bits (586), Expect = 0.0
Identities = 667/706 (94%), Gaps = 6/706 (1%)
Strand=Plus/Plus
Query 1 TGATCAAATTCC-aaaaaaaaaTGGCCAGTGTCACCTCGGAGCTTATTGCAATGGATGCC 59
|||||||| ||| || | | |||| || | ||||||||||||| |||||| |||||||||
Sbjct 75 TGATCAAA-TCCTAAGAGAGAATGTCCGGCGTCACCTCGGAGCCTATTGCTATGGATGCC 133
Query 60 ACTCGATTCCAGCACACTCCCTACTACTGCGAAGAGAACGTGTATCTGCTCTGCAAGAAG 119
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 134 ACTCGGTTCCAGCACACTCCTTACTACTGCGAAGAGAATGTGTATCTGCTCTGCAAGACG 193
Query 120 TTGTGCGAGAATGGTGTAGCGGATGCAACG-GATTCTGATTTGTTTGTTGTTTTCATCTC 178
||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct 194 TTGTGCGAGAATGGTGTAGCGGAGGCAACGTG-TTCTGATTTGTTTGTTGTTTTTATCTC 252
Query 179 GAATGAGAAGAAGCAGGTTCCACTTTGGCATCAGAAAGCTAGTAGCAGAGCTGATGGGGT 238
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 253 CAATGAGAAGAAGCAGGTTCCACTTTGGCATCAGAAAGCTAGTACCAGAGCTGATGGGGT 312
Query 239 TGTACTGTGGGATTATCATGTCATCTGTGTCCAGAGGAAGAAAGTAAGTGATTCTGAGCC 298
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 313 TGTACTGTGGGATTATCATGTCATCTGTGTCCAGAGGAAGAAAGAAAGTGATTCTGAGCC 372
Query 299 TTTGGTGTGGGATCTTGATTCGACTTTGCCCTTCCCTTCACCCTTAGCCTCATATGTGAC 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 373 TTTGGTGTGGGATCTTGATTCGACTTTGCCTTTCCCTTCACCCTTAGCCTCATATGTGAC 432
Query 359 TGAAACTATCCAGCCATCTTTTCAGCTTTTCGCAGACTACCAGAGGTTCTTCCGCATTGT 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 433 TGAAACTATCCAGCCATCTTTTCAGCTTTTCGCAGAGTACCAGAGGTTCTTCCGCATTGT 492
Query 419 TCATGCTCCTCTGTTCTTTAAGCACTTT-GCTTCTGATAGAAGACACATGAAAGAGCCTG 477
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||
Sbjct 493 TCATGCTCCTCTGTTCTTTAAGCA-TTTCGCTTCCGATAGAAGACACATGAAAGAACCTG 551
Query 478 ATGGAAGTTGGACTGCTCAACCTCCACCCTATGAACCCATTGTTGCCCAAGACGGAATTT 537
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 552 ATGGAAGTTGGACTGCTCAACCTCCACCCTATGAACCCATTGTTGCCCAAGATGGAATCT 611
Query 538 TGCACAATTTGAGCGAGTACATTTCCATGAGCGGTGTGGATACATTGTCGAGCTTGGATG 597
||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 612 TGCACAATTTGAGCGAGTACATTGCCATGAGCGGTGCGGATACATTGTCAAGCTTGGATC 671
Query 598 CTGAAACAGTGAGAGCGGCGATTTCGCAGAAACTTGGTGTTGTGGTGAGCCACACTCAGC 657
| |||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 672 CCGAAACAGTGACAGCAGCAATTTCACAGAAACTTGGTGTTGTGGTGAGCCACACTCAGC 731
Query 658 TTCAGGATCTCTTCACCAAGCTTCCTTAGCATTCCAAGGTCttttt 703
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 732 TTCAGGATCTCTTCACCAAGCTTCCTTAGCATTCCAATGTCTTTTT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5