BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935030
Length=506
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41780.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 340 6e-93
> AT2G41780.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:17428098-17428812 FORWARD LENGTH=715
Length=715
Score = 340 bits (184), Expect = 6e-93
Identities = 335/401 (84%), Gaps = 38/401 (9%)
Strand=Plus/Plus
Query 22 ATGGACGATGAGACGGAGAACGGTAAGATTATCATGAATAAGGAGCAACTGCTTTTGTTT 81
|||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 60 ATGGACGACAAGACGGCGGGTGGTAAGATTGTCATGAATAAGGAGCAACTGCTTTTGTTT 119
Query 82 ATGGAAAACAGGCGGAAGCAGGAGGATCACCGTCTCGC-C-C-TCAAGGAAGCCACCAGA 138
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 120 ATGGAAAACAGGCGGAAGCAGGAGGATCACCGTCTCGCTCTCGCCAAGGAAGCCACCAGA 179
Query 139 TCTGCGATGGTTGACCGGAAGGGGATGGTTTCGAAGGCCAGCGGTAAGATAATCATGAAT 198
|||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 180 TCTGAGATGGTTGACC-----------G----GAAGGCCAGCGGTAAGATAATCATG--- 221
Query 199 AATGATCATGATCAGCAGCTTATGTTTGAGGAGGATCATCGTCTCGCCGTCAAGAAAGCC 258
| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 222 -A--ATCATGATCAGCAGCTTATGTTTAACGAGGATCACCGTCTCGCCGTCAAGAAAGCC 278
Query 259 ACCAGATCTGAGATGGTTGACCGGGAGCTGGAGGGGATAGTTTCGAAGGCGAGCT-TAAT 317
| |||||||||||||||||| | ||||||||||| | |||| ||||||| | ||||
Sbjct 279 AGCAGATCTGAGATGGTTGA-C-----CTGGAGGGGATGGGTTCGGAGGCGAG-TGTAAT 331
Query 318 CATGAATAATGTTCCACGGCC-A--GCTTTTAACGAGGAACACATTCTCGCCATCAAGAA 374
|||| ||||||||||| ||| | |||||| |||||| |||| ||||||||||||||
Sbjct 332 AATGAGTAATGTTCCACAGCCAACTTCTTTTAGCGAGGATCACAAGCTCGCCATCAAGAA 391
Query 375 CATCATATCTGAGATTATGATGAAGGCGAGCCGCGATAGAG 415
|||||||||| ||||| | | |||| || |||||||||||
Sbjct 392 CATCATATCTAAGATT--G-TCAAGGAGATCCGCGATAGAG 429
Score = 73.1 bits (39), Expect = 2e-12
Identities = 53/59 (90%), Gaps = 3/59 (5%)
Strand=Plus/Plus
Query 227 AGGAGGATCATCGTCTCG--C-CGTCAAGAAAGCCACCAGATCTGAGATGGTTGACCGG 282
|||||||||| ||||||| | || |||| |||||||||||||||||||||||||||||
Sbjct 139 AGGAGGATCACCGTCTCGCTCTCGCCAAGGAAGCCACCAGATCTGAGATGGTTGACCGG 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24162624707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5