BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935037
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41835.1 | Symbols: | zinc finger (C2H2 type, AN1-like) fam... 1314 0.0
AT5G48205.1 | Symbols: | zinc ion binding | chr5:19546937-1954... 167 2e-40
> AT2G41835.1 | Symbols: | zinc finger (C2H2 type, AN1-like) family
protein | chr2:17457786-17459568 REVERSE LENGTH=1228
Length=1228
Score = 1314 bits (711), Expect = 0.0
Identities = 831/889 (93%), Gaps = 8/889 (1%)
Strand=Plus/Plus
Query 1 GGAATTGTTGTTCGAATTCGAATGGGAACACCGGAATTTCCAGATCTGGGGAAACACTGC 60
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 134 GGAATTGTTGTTCGAATTCGAATGGGGACTCCGGAATTTCCAGATCTGGGGAAACACTGC 193
Query 61 TCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCCTTCACCTGCGACCGTTGCCTCCAG 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 194 TCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAG 253
Query 121 GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCGACAGAGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 254 GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCGATAGAGAA 313
Query 181 GATGTAACCGTGGTTATCTGTCCGCTCTGTGCTAAAGGAGTCCGGTTAAACCCAAACGAA 240
||||| || || |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 314 GATGTGACTGTAGTTATCTGCCCACTCTGTGCTAAAGGAGTCCGATTAAACCCAAACGAA 373
Query 241 GACCCAAATATAACATGGGAGAAACATGTCAACACTGATTGTGACCCATCAAACTATGAA 300
|||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct 374 GACCCAAATATAACATGGGAGAAACATGTCAATACCGACTGTGACCCATCAAACTACGAA 433
Query 301 AAAGCCACCAAGAAGAAGAAATGTCCGGTTCCAAGATGCAAGGAGCAACTAACATTCTCC 360
||||| || ||||||||||||||||| |||||||||||||||||| | ||||| ||||||
Sbjct 434 AAAGCTACAAAGAAGAAGAAATGTCCCGTTCCAAGATGCAAGGAGTACCTAACTTTCTCC 493
Query 361 AACACCATCAAGTGCCGGGATTGCAATATCGATCACTGCTTAAAACACCGTTTTGGACCT 420
||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 494 AACACCATCAAGTGCCGAGATTGCAATGTCGATCACTGCTTGAAACATCGTTTTGGACCT 553
Query 421 GATCACACTTGCCCTGGACCAAGAAAACTCCCATTCATGGGTTTCTTGagtagtagtagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GATCACACTTGCCCTGGACCAAGAAAACTCCCATTCATGGGTTTCTTGAGTAGTAGTACC 613
Query 481 agtagCAGCAGAAAAGAAGCTAAGACAACAAGACCCACCAAAGCTCATGCATCAACTTCA 540
| | ||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 614 A----C--CAGAAAAGAAGCTAAGACAACAAGACCCAACAAAGCTCATCCATCAACTTCA 667
Query 541 tcttcttcttcttcttcAAGATGGTCCAATCTTCTATCTTCAGCAGAAGCAGGGATCAGC 600
|| |||||||||||||| |||||||| ||||| |||||||||||||||||||| || |||
Sbjct 668 TCATCTTCTTCTTCTTCGAGATGGTCTAATCTCCTATCTTCAGCAGAAGCAGGAATTAGC 727
Query 601 AGGCTCGGTAACGACATTAGCCAGAAGCTACAGTTTTTGAGCAGCAGCAG-TGATGGTAT 659
||||||||||| ||||||||||||||||||||||||| |||||||| || | |||||||
Sbjct 728 AGGCTCGGTAATGACATTAGCCAGAAGCTACAGTTTTCGAGCAGCAA-AGATAATGGTAT 786
Query 660 CGTGGAGGTGTGTCCACAGTGCGGTGCGAAATTCTCTTCAGTTACTACTCTTGTGGAACA 719
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 787 CGTGGAGGTGTGTCCACAGTGCGGTGCGAAATTCTCTTCGGTTACTTCTCTTGTGGAACA 846
Query 720 TGTAGAGAAAACACATGAGAGGAACAGGAAGCAGAATCATGGCAATGTCACAGTCGATGT 779
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 847 TGTAGAGAAAACACATGAGAGGAACAAGAAGCAGAATCATGGCAATGTCACGGTCGATGT 906
Query 780 CTGCCCTAAATGTAGCAGAGGATTCCGCGATCCAGTAGATCTTGTGAATCATATCGAAAG 839
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 907 CTGCCCTAGATGTAGCAGAGGATTCCGCGATCCAGTAGATCTTGTGAACCATATCGAAAG 966
Query 840 AGAACACCGAGGTACTTCTAAAGCATAGGAACATAGGCGTTCACAAGCC 888
||| |||||||| ||||| |||||||||||||||| ||||| |||||||
Sbjct 967 AGATCACCGAGGCACTTCGAAAGCATAGGAACATATGCGTTTACAAGCC 1015
> AT5G48205.1 | Symbols: | zinc ion binding | chr5:19546937-19547787
REVERSE LENGTH=576
Length=576
Score = 167 bits (90), Expect = 2e-40
Identities = 116/129 (90%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 22 ATGGGAACACCGGAATTTCCAGATCTGGGGAAACACTGCTCCGTCGATGTTTGCAAGCAA 81
||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGACTCCGGAATTTCCAGATCTAGGGAAACACTGCTCCGTCGATGTTTGCACGCAG 60
Query 82 ATCGATTTCTTGCCCTTCACCTGCGACCGTTGCCTCCAGGTGTTTTGTTTGGATCATCGA 141
|||||||||||||||||||| || || || ||||| |||||| |||||||||||||| |
Sbjct 61 ATCGATTTCTTGCCCTTCACATGTGATCGCTGCCTTCAGGTGCTTTGTTTGGATCATTGT 120
Query 142 AGCTATATG 150
|||||||||
Sbjct 121 AGCTATATG 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5