BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935051
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41940.1 | Symbols: ZFP8 | zinc finger protein 8 | chr2:1750... 1155 0.0
AT3G58070.1 | Symbols: GIS | C2H2 and C2HC zinc fingers superfa... 143 3e-33
> AT2G41940.1 | Symbols: ZFP8 | zinc finger protein 8 | chr2:17507509-17508616
FORWARD LENGTH=1108
Length=1108
Score = 1155 bits (625), Expect = 0.0
Identities = 761/820 (93%), Gaps = 35/820 (4%)
Strand=Plus/Plus
Query 4 ctctctctga--tctctctTCCATGGACGAAACCAACGGACGAAGAGAAACTCACGATTT 61
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 CTCTCCCTGATCTCTCTCTTCCATGGACGAAACCAACGGACGAAGAGAAACTCACGATTT 85
Query 62 CATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTTATCCGCCGTACTCCGCCCAA 121
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 86 CATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTCATCCGCCGTACTCCTCCCAA 145
Query 122 AGAAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAACTCGTCGGAGATAACTCGGAGAA 181
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct 146 AGAAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAGCTCGTCGGTGATAACTCCGACAA 205
Query 182 CTTATCGGCAGTATTTTCTG---ATCAAACCACTACCAAGAACGATGAGAGCTCTGAGAA 238
|||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 206 CTTATCCGCAGAACCTTCTGATCATCAAACCACTACCAAGAACGATGAGAGCTCTGAGAA 265
Query 239 TATCAA-G-----GAC----------A-AA-GACAAAGACAAAGATAACAACAACAACAG 280
|||||| | ||| | || |||||||||||||||||||||||||||||
Sbjct 266 TATCAAGGACAAAGACAAAGAAAAAGATAAGGACAAAGACAAAGATAACAACAACAACAG 325
Query 281 GAGATTCGAATGTCACTACTGCTTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACA 340
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GAGATTCGAGTGTCACTACTGCTTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACA 385
Query 341 CCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCT 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCT 445
Query 401 TCACCATCATCATCAGCCTCATGACCCTCACCACGTCTACGGCTTCCTCAACAACCACCA 460
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 446 T---CATCATCATCAGCCTCATGACCCTCACCACATCTACGGCTTCCTCAACAACCACCA 502
Query 461 CCACCGTCACTATCCGTCGTGGACGACGGAAGCTAGATCATACTACGGTGGAGGGCCGGG 520
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| || |||
Sbjct 503 CCACCGTCACTATCCGTCTTGGACGACGGAAGCTAGATCATACTACGGCGGA-GG--GGG 559
Query 521 ACATCAAACGTCGTCGTACTACTCAAGGAGTACTCTTGCCCCTCCTTCTTCTAACCCACC 580
|||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 560 ACATCAAACGCCGTCGTACTACTCAAGGAATACTCTTGCTCCTCCTTCTTCTAACCCACC 619
Query 581 GACAATCAACGGAAGTCCTTTAGGTCTGTGGCGTGTACCGCCTTCCACGTCAACAAACGC 640
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 620 GACAATCAACGGAAGTCCTTTAGGTTTGTGGCGTGTACCGCCTTCCACGTCAACAAATAC 679
Query 641 TATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGACGCATGAGCCAGAGA- 699
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 680 TATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGTCGCATGAGCAAGAGAC 739
Query 700 T--TAAGGAGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTGCAAGATCATGT 757
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TAATAAGGAGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTGCAAGATCATGT 799
Query 758 GAGTCTCGATCTTCATCTCTGACtt-tttt-tttt-tttt 794
||||||||||||||||||||||||| |||| |||| ||||
Sbjct 800 GAGTCTCGATCTTCATCTCTGACTTCTTTTATTTTATTTT 839
> AT3G58070.1 | Symbols: GIS | C2H2 and C2HC zinc fingers superfamily
protein | chr3:21506613-21507654 REVERSE LENGTH=1042
Length=1042
Score = 143 bits (77), Expect = 3e-33
Identities = 99/110 (90%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 274 ACAACAGGAGATTCGAATGTCACTACTGCTTCAGAAACTTCCCAACTTCTCAAGCCCTAG 333
|||||||||||||||| |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct 308 ACAACAGGAGATTCGAGTGTCACTATTGCTTTAGAAATTTTCCTACTTCACAAGCCCTAG 367
Query 334 GTGGACACCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGT 383
||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 368 GTGGACACCAAAACGCTCACAAACGCGAACGTCAGCTTGCCAAACGCGGT 417
Score = 60.2 bits (32), Expect = 3e-08
Identities = 37/39 (95%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 738 CCC-AATGTGCAAGATCATGTGAGTCTCGATCTTCATCT 775
||| || ||||||||||||||||||||||||||||||||
Sbjct 768 CCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCT 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5