BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935056
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41980.1 | Symbols: | Protein with RING/U-box and TRAF-like... 1583 0.0
AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsi... 972 0.0
> AT2G41980.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr2:17523494-17525914 REVERSE LENGTH=1335
Length=1335
Score = 1583 bits (857), Expect = 0.0
Identities = 914/942 (97%), Gaps = 2/942 (0%)
Strand=Plus/Plus
Query 1 TTTTGGGTAGGTTTGGACTCTCCATGGCTCCTGGTGGCAGTGCGTTGAAAGAAACTTTAG 60
|||||| ||||||||||||||| |||||||||||||||||||| ||||||||| || |||
Sbjct 395 TTTTGGCTAGGTTTGGACTCTCTATGGCTCCTGGTGGCAGTGCATTGAAAGAAGCTCTAG 454
Query 61 AATCTAACTCGACAGGCTTAGATTATGAGGTTAAGATGTCAAAGGTTGAGACTAATAGCA 120
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 455 AATCTAACTCGACAGGCGTAGATTATGAGGTTAAGATGGCAAAGGTTGAGGCTAATAGCA 514
Query 121 AACCAACAAAGTCAGGTAGTGGCTCCATTGGAAAATTCCATTCGAGCAATGGTGTTTATG 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AACCAACAAAATCAGGTAGTGGCTCCATTGGAAAATTCCATTCGAGCAATGGTGTTTATG 574
Query 181 AGCTCCTCGAATGTCTGGTTTGTACAAATCTAATGTATCCTCCAATTCATCAGTGCCCGA 240
||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 575 AGCTCCTTGAATGTCCGGTTTGTACAAATTTAATGTATCCTCCAATTCATCAGTGCCCGA 634
Query 241 ACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 ACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGCC 694
Query 301 GCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCAGAATCATTGGAAG 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 695 GCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCGGAATCATTGGAAG 754
Query 361 TTCCATGCCGGTACCAAAATTTAGGGTGTCATGACATTTTCCCATACTACAGCAAGCTCA 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 755 TTCCATGCCGGTACCAAAATTTAGGGTGTCAGGACATTTTCCCATACTACAGCAAGCTCA 814
Query 421 AGCACGAGCAGCATTGCAGGTTTCGATCCTACAACTGTCCTTATGCTGGTTCTGAGTGTT 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 815 AGCACGAGCAGCATTGCAGGTTTCGATCCTACAGCTGTCCTTATGCTGGTTCTGAGTGTT 874
Query 481 CAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTGATA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 875 CAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTGACA 934
Query 541 TGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCACGAGGTCGAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 935 TGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCATGAGGTCGAGA 994
Query 601 ATGCTACATGGATGCTTACGGTCTTCAACTGTTTTGGAAGACAGTTCTGCTTACACTTTG 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 995 ATGCTACATGGATGCTTACGGTCTTCAACTGTTTCGGAAGACAGTTCTGCTTACACTTTG 1054
Query 661 AGGCGTTTCAGCTCGGGATGGCACCAGTGTACATGGCGTTTCTACGGTTCATGGGAGACG 720
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1055 AGGCGTTTCAGCTCGGGATGGCACCAGTGTACATGGCGTTTCTAAGGTTTATGGGAGACG 1114
Query 721 AGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGCCGCAAACTGA 780
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1115 AGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGTCGTAAACTAA 1174
Query 781 CATGGCAAGGGATTCCCA-GAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAGTCAA 839
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 CATGGCAAGGGAT-CCCAAGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAGTCAA 1233
Query 840 GACGGCCTCATCATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAGTGACAAAGAAGAG 899
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GACGGACTCATAATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAGTGACAAAGAAGAG 1293
Query 900 CTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 941
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 CTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 1335
> AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis
2 | chr3:21488516-21491488 FORWARD LENGTH=1601
Length=1601
Score = 972 bits (526), Expect = 0.0
Identities = 812/948 (86%), Gaps = 27/948 (3%)
Strand=Plus/Plus
Query 12 TTTGGACTC-TCCATGGCTCCTGGTGGCAGTGCGTTGAAAGAAACT-TTAGAATCTAACT 69
||||| ||| | |||||||||||| |||||||| ||||||| || | | |||||||| |
Sbjct 260 TTTGGGCTCGT-CATGGCTCCTGGAGGCAGTGCTTTGAAAG-AAGTCATGGAATCTAATT 317
Query 70 CGACAGGCTTAGATTATGAGGTTAAGATGTCAAAGGTTG-AG--ACTAATAGCAAACCAA 126
| || || | ||||| |||||||| | | |||| || | || | ||||| |||||| |
Sbjct 318 CAACGGGAATGGATTACGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATAACAAACCTA 377
Query 127 CAAAGTCAGGTAGTGGC-TCCATTGG-AAA-AT----TCCATTCGAGCAATGGTGTTTAT 179
||||| |||| ||| || ||||| ||| || ||||||||| ||||||||||||
Sbjct 378 CAAAGCCAGGGAGT-GCAGGGATTGGAAAATATGGGATCCATTCGAACAATGGTGTTTAC 436
Query 180 GAGCTCCTCGAATGTCTGGTTTGTACAAATCTAATGTATCCTCCAATTCATCAGTGCCCG 239
||||| || ||||||| || ||||||||| ||||||| ||||||||||||||||| |||
Sbjct 437 GAGCTTCTTGAATGTCCCGTCTGTACAAATTTAATGTACCCTCCAATTCATCAGTGTCCG 496
Query 240 AACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACATGC 299
|| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 497 AATGGCCACACATTATGTTCAAACTGCAAACTGAGAGTGCAGAACACATGCCCTACATGT 556
Query 300 CGCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCAGAATCATTGGAA 359
||||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 557 CGCTACGAGCTTGGTAACATAAGATGCTTAGCTCTTGAGAAAGTTGCAGAGTCTTTGGAA 616
Query 360 GTTCCATGCCGGTACCAAAATTTAGGGTGTCATGACATTTTCCCATACTACAGCAAGCTC 419
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 617 GTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTCCCTTACTACAGCAAGCTT 676
Query 420 AAGCACGAGCAGCATTGCAGGTTTCGATCCT-ACAACT-GTCCTTATGCTGGTTCTGAGT 477
|||||||||||||||||||||||| | ||| ||| || | |||||||||||||||||||
Sbjct 677 AAGCACGAGCAGCATTGCAGGTTTAGG-CCTTACA-CTTGCCCTTATGCTGGTTCTGAGT 734
Query 478 GTTCAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGTTG 537
|||| || || |||||||| || || ||||| | ||||||||||||||||||||||| |
Sbjct 735 GTTCGGTTACAGGTGATATCCCTACACTTGTCGTTCATCTCAAAGATGATCATAAAGTCG 794
Query 538 ATATGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCACGAGGTCG 597
|||||||||| || ||||| |||||||| |||||||| ||||||||||| || |||||||
Sbjct 795 ATATGCATGACGGATGCACCTTCAACCACCGTTATGTAAAGTCAAATCCACATGAGGTCG 854
Query 598 AAAATGCTACATGGATGCTTACGGTCTTCAACTGTTTTGGAAGACAGTTCTGCTTACACT 657
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 855 AAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCTGTTTACACT 914
Query 658 TTGAGGCGTTTCAGCTCGGGA-TGGCACCAGTGTACATGGCGTTTCTACGGTTCATGGGA 716
| |||||||| ||||| |||| |||| |||||||||||||| || || || || ||||||
Sbjct 915 TCGAGGCGTTCCAGCT-GGGAATGGCTCCAGTGTACATGGCATTCCTTCGTTTTATGGGA 973
Query 717 GACGAGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGCCGCAAA 776
|| ||||||||||| |||||||||||||||||||||||||| |||||||| | || |||
Sbjct 974 GATGAGAACGAGGCGAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATGGACGGAAA 1033
Query 777 CTGACATGGCAAGGGATTCCC-AGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGATAG 835
| |||||||||||||| ||| ||||||||| | |||||||||||||||||||| || ||
Sbjct 1034 TTAACATGGCAAGGGAT-CCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCCGGGACAG 1092
Query 836 TCAAGACGGCCTCATCATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAG-TGACAAAG 894
||||||||| ||||||||||| || ||| | || | ||||||||||| || ||| | |
Sbjct 1093 TCAAGACGGACTCATCATCCCAAGGAACCTCGCACTCTACTTCTCTGG-AGGTGATAG-G 1150
Query 895 -AAGAGCTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 941
|||| ||||||||| |||| |||||||| || |||||||| || |||
Sbjct 1151 CAAGAACTCAAGTTGAGAGTGACTGGACGAATCTGGAAAGAGGAGTAA 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5