BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935057
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41990.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Late embr... 1277 0.0
> AT2G41990.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Late embryogenesis
abundant protein, group 2 (InterPro:IPR004864);
BEST Arabidopsis thaliana protein match is: Late embryogenesis
abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1);
Has 172 Blast hits to 168 proteins in 15 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:17527257-17528937 FORWARD LENGTH=1443
Length=1443
Score = 1277 bits (691), Expect = 0.0
Identities = 854/933 (92%), Gaps = 10/933 (1%)
Strand=Plus/Plus
Query 5 GAAAGAGAAAGAGAGACATGCATGCGAAGACAGACTCGGAGGCAACAAGCATAGACGCGG 64
||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 124 GAAAGAGTCA-AGAGACATGCATGCGAAGACAGACTCGGAGGCAACAAGCATCGACGCAG 182
Query 65 CTGCTTTGTCTCCGCCGCGTTCAGCGATTAGACCTCTTTACTACGTACAGAGTCCATCCA 124
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 183 CGGCTTTGTCTCCGCCGCGTTCAGCGATTAGACCTCTTTACTATGTACAGAGTCCATCAA 242
Query 125 ACCATGACGTGGAGAAGATGTCATTCGGGTCTGGTTGCAGCCTAATGGGTTCACCTTCAC 184
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 243 ACCATGACGTGGAGAAGATGTCATTTGGTTCTGGTTGCAGCCTAATGGGTTCACCTACAC 302
Query 185 ACCCACATTACTACCATTGCTCACCAATCCATCACTCCCGCGAGTCATCCACCTCTCGCT 244
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 303 ATCCACATTACTACCATTGCTCACCAATCCATCACTCCCGTGAGTCATCCACCTCTCGCT 362
Query 245 TCTCCGACCGTGCCCTTCTCTCTTACAAGTCCATCCGTGAACGCCGCCGGTACGTCAACG 304
|||| |||||||| || |||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 363 TCTCTGACCGTGCTCTCCTCTCTTACAAGTCCATCCGTGAACGTCGCCGATACATCAACG 422
Query 305 ACGGAGACGACAAAACTGACGGCGGAGAT---GACGACCCGTTTCGAAATGTGCGCCTCT 361
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 423 ACGGAGACGACAAAACTGACGGCGGAGATGACGACGACCCGTTTCGGAATGTGCGACTCT 482
Query 362 ACGCTTGGTTGCTCCTCTCCATAGTCTTCTTGTTCACAGTCTTCTCTCTTATATTGTGGG 421
||| |||||||||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 483 ACGTTTGGTTGCTCCTCTCCGTAATCTTCTTGTTCACAGTCTTCTCTCTTATACTCTGGG 542
Query 422 GTGCTAGCAAA-CACTACCCTCCTAAAGTTGTC-GTAAAGGGGATGCTGGTGAGGAACTT 479
||||||||||| | ||||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct 543 GTGCTAGCAAATC-CTACCCTCCCAAAGTT-ACTGTAAAGGGGATGCTGGTGAGGGACTT 600
Query 480 GAACGTGCAGGCAGGGAACGATCTCAGCGGAGTGCCAACGGACATGCTGTCTCTTAATTC 539
|||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 601 GAACTTGCAGGCAGGGAACGATCTTAGCGGAGTGCCTACGGACATGTTGTCTCTTAATTC 660
Query 540 GACGGTCAGGATCT-TCTACAGAAACCCATCAAATTTCTTCGCCGTCCACGTCACTGCTT 598
|||||||||||| | | ||| | |||||||||| |||||| |||||||||||||||||||
Sbjct 661 GACGGTCAGGATATAT-TACCGTAACCCATCAACTTTCTTTGCCGTCCACGTCACTGCTT 719
Query 599 ctcctctcctccttcactactccaacctcctcctctcctccGGTGAGATTAACAAGTTCA 658
||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 720 CTCCTCTTCTCCTTCACTACTCCAACCTCCTACTATCCTCCGGTGAGATGAACAAGTTCA 779
Query 659 CGGTTGCTAGACACGGCGAAAGGACCGTAGTGACGGTGGTGCAAGGCCATCAGATTCCTC 718
|||||| |||| | ||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 780 CGGTTGGTAGAAATGGCGAAACGAACGTAGTGACGGTGGTGCAAGGCCATCAGATTCCCC 839
Query 719 TCTACGGTGGTGTCTCTTTCCATCTCGACACTCTCTCCATCCCGCTTAATCTCACTCTTG 778
||||||||||||| ||||||||||| || || |||||| | ||||||||||||||| | |
Sbjct 840 TCTACGGTGGTGTTTCTTTCCATCTTGATACACTCTCCCTGCCGCTTAATCTCACTATCG 899
Query 779 TCCTCCATACAAAAGCTTACATTTTGGGAAGACTCGTCACCTCCAAGTTCTATACAAAGA 838
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TCCTCCATTCAAAAGCTTACATTTTGGGAAGACTCGTCACCTCCAAGTTCTATACAAGGA 959
Query 839 TCATCTGCTCATTCACTCTCAATGCCGACCATCTCCCAAAACCCATCTCTCTTCTCCGTT 898
|||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||| |
Sbjct 960 TCATCTGCTCATTCACTCTCGACGCCAACCATCTCCCAAAATCCATCTCTCTTCTCCGCT 1019
Query 899 CATGTAAAGATTACCACTGATTACACTTGTGTG 931
| |||| ||| |||||||||||| ||||||
Sbjct 1020 CCTGTATTCCTTAACACTGATTACACGTGTGTG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5