BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935058
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42000.2 | Symbols: | Plant EC metallothionein-like protein... 322 1e-87
> AT2G42000.2 | Symbols: | Plant EC metallothionein-like protein,
family 15 | chr2:17529243-17530443 REVERSE LENGTH=609
Length=609
Score = 322 bits (174), Expect = 1e-87
Identities = 229/255 (90%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 5 AAGAGTGAAAAAGAAAATGGCAGACACAGGCAAAGGAAGCTCTGTTACTGTCTGCAACGA 64
|||| |||||| |||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 172 AAGATTGAAAACGAAAATGGCAGATACAGGCAAAGGAAGCTCTGTCGCTGGCTGCAACGA 231
Query 65 TCGCTGTGGCTGCCCTTCTCCCTGTCCCGGAGGCAAATCCTGCAGGTGCATGATGAGAGA 124
| |||||||||||||||||||||||||||| || || ||||||||||||| |||||||||
Sbjct 232 TAGCTGTGGCTGCCCTTCTCCCTGTCCCGGTGGGAATTCCTGCAGGTGCAGGATGAGAGA 291
Query 125 AGCTTCTGGTGGGGATCAAGGGCACATGTTGTGCCCGTGTGGGGAGCAATGTGGCTGCAA 184
||| |||| ||||||||||||||||||| ||||||||||||||||||| || || |||||
Sbjct 292 AGCATCTGCTGGGGATCAAGGGCACATGGTGTGCCCGTGTGGGGAGCACTGCGGATGCAA 351
Query 185 CCCCTGCAACTGCCCCAAGACCCAATCACAAACCCAAACCTCCGCCAAGGACTGAACCTG 244
||||||||||||||||||||||||| || || ||||||||||||||| ||| |||||
Sbjct 352 CCCCTGCAACTGCCCCAAGACCCAA--AC---CC-AAACCTCCGCCAAGGGCTGCACCTG 405
Query 245 TGGTGAGGGCTGCAC 259
||||||||| |||||
Sbjct 406 TGGTGAGGGTTGCAC 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11812921015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5