BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935075

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42140.1 | Symbols:  | VQ motif-containing protein | chr2:17...   617    3e-176


> AT2G42140.1 | Symbols:  | VQ motif-containing protein | chr2:17568677-17569527 
REVERSE LENGTH=851
Length=851

 Score =  617 bits (334),  Expect = 3e-176
 Identities = 483/551 (88%), Gaps = 25/551 (5%)
 Strand=Plus/Plus

Query  5    TTCTACAAAACTATATATGGAAATTGAAGCTACTACTGTTCAGAAAAGAAGAAGCATACC  64
            |||||||||||    |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  34   TTCTACAAAAC----TATGGAAATTGAAGCTACTACTGTTCAGAAAAGAAGAAGCTTACC  89

Query  65   AACAATAGCCATGCACAAGCAGTCAAGAACACTAACCAAATCTAAACCTAAGATCCGCAT  124
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct  90   AACAATAGCCATGCACAAACAGTCAAGAACACTCACCAAATCTAAACCTAAGATCCGAAT  149

Query  125  CATCCACATATTCGCACCGGAGATCATTAAGACCGACGTCTCTAACTTCAGGAAAATCGT  184
            ||| |||||||||||||||||||||||||||||||| ||| | |||||| || |||||||
Sbjct  150  CATTCACATATTCGCACCGGAGATCATTAAGACCGATGTCGCCAACTTCCGGGAAATCGT  209

Query  185  CCAGAATCTCACCGGAAAACAAGATCATGA-C-C-ACGACCTCCCTCACCAAAAGGGCCT  241
            ||||||||||||||| |||||||||||| | | | |||| ||||| ||||||||||| ||
Sbjct  210  CCAGAATCTCACCGGGAAACAAGATCATCATCACCACGATCTCCCCCACCAAAAGGGTCT  269

Query  242  AAAAAGAAACCCTAGATCTAGAGGAAGTCATGATCATGATGATCATCATCAAGTCCATCA  301
             ||||||||||||||||||||| |||||||||||||| ||||   ||  || | | || |
Sbjct  270  CAAAAGAAACCCTAGATCTAGAAGAAGTCATGATCATCATGAAG-TC--CATGAC-ATGA  325

Query  302  -CATGAACAA-GAGATTCTGCACAAACTCAGAAGTAGAAGACGAAGAAGAAGTAGGGATG  359
             || || | | | |||| |||| |||||||||  | ||||| |  |||||||  || |||
Sbjct  326  ACAAGAGCCATG-GATTTTGCATAAACTCAGA--T-GAAGA-G--GAAGAAG--GG-ATG  375

Query  360  GTGTCGATGACGTGGAACGGAAATGGCGGTGAGAGCTCCGGTGGGTTCTTCAACGGGTTA  419
            |||||||||||||||||||||||||| |  |||||||||||||||||||| |||||||||
Sbjct  376  GTGTCGATGACGTGGAACGGAAATGGTGACGAGAGCTCCGGTGGGTTCTTGAACGGGTTA  435

Query  420  GGGGATTTCGGCGGCTTCATTCAGGAGCTAGATGAATTCCCTTATTTACCCTTCACCATT  479
            || ||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct  436  GGAGATCTCGACGGCTTCATTCAGGAGCTAGGTGAATTTCCTTATTTACCCTTCACCATT  495

Query  480  GACCCTACTGTTGCTTCTTCTGTCC-ACTTACATGGCAACGTTTTCGCTGAACCTAACCA  538
            |||||| | |||||||||||  ||| |||||||||||||||||||||| |||||| ||||
Sbjct  496  GACCCTGCCGTTGCTTCTTCC-TCCCACTTACATGGCAACGTTTTCGCAGAACCTCACCA  554

Query  539  TTATGCCTAAA  549
            ||| |||||||
Sbjct  555  TTACGCCTAAA  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27327375968


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5