BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935078
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42160.1 | Symbols: BRIZ1 | zinc finger (ubiquitin-hydrolase... 2362 0.0
> AT2G42160.1 | Symbols: BRIZ1 | zinc finger (ubiquitin-hydrolase)
domain-containing protein | chr2:17574641-17577463 REVERSE
LENGTH=1735
Length=1735
Score = 2362 bits (1279), Expect = 0.0
Identities = 1436/1512 (95%), Gaps = 10/1512 (1%)
Strand=Plus/Plus
Query 1 GCTCTTTCCCGCTTCTGGCGATGTTCATCCTCAGAGTTCATTCCGTTGACTCCGAGCGAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 47 GCTCTTTCCCGCTTCTGGCGATGTTCATCCTCAGAGTTCATTCCGTTGACTCCGAGAGAC 106
Query 61 CAATCTCCATTGAAGAAGATGAATCAGGTTTCACCTACGCATC-AAAGAGAACTCAGCCT 119
|||||||| |||||||||| |||||||||||||| |||||||| ||| ||| ||||||||
Sbjct 107 CAATCTCCGTTGAAGAAGAAGAATCAGGTTTCACTTACGCATCGAAA-AGAGCTCAGCCT 165
Query 120 CCTCTTAAACTCATACAACCATCTCTCAAACTCACCGAACGCAAAGGCTTGATCCATCTC 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 166 CCTCTTAAACTCATACAACCATCTCTCAAACTCACCGACCGCAAAGGCTTGATCCATCTC 225
Query 180 TACCGCAACTCTTCACATAGCTCGCTACCTAACCCTAGCTCCCGATCCACCACTCTCTTC 239
|| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 226 TATCGCAAATCTTCACATAGCTCTCTGCCTAACCCTAGCTCCCGATCCACCACTCTCTTC 285
Query 240 ATCGTCGCTGTTCCCAATTA-CATGTCCTCTCTCGATTTTATCCGTTTCTGTGATTCCCG 298
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 286 ATCGTCGCTGTTCCCAATTATC-TCTCCTCTCTCGATTTTATCCGTTTCTGTGATTCCCG 344
Query 299 CATCTCCCAAGTCTCCGATATCCTCTTCATCAGGAACGATGGAATGGAAGATCGATATAG 358
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 345 CATCTCCCAAGTCTCCGACATCCTCTTCATCAGGAACGATGGAATGGAAGATAGATATAG 404
Query 359 TGTTCTTATCACACTTAGTGATCAATCCGAAGCAGATGGTTTCTACAATTACCTGAATGG 418
||||||||||||| || ||||||||||||||| |||||||||||||| || |||||||
Sbjct 405 TGTTCTTATCACATTTTCTGATCAATCCGAAGCTGATGGTTTCTACAACAACTTGAATGG 464
Query 419 GAAAACA-TTTTCACCATCTGAGGCTGAGGTTTGTCATATTCTCTATGTAATGTCGGTGG 477
||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 465 GAAAA-AGTTCGCACCATCTGAGGCTGAGGTTTGTCATATTCTATATGTAATGTCGGTGG 523
Query 478 ATCACACGGAATTTGATGTGGTTGCTGCAGAAGCACCTGCTGGATTTACCGAGTTACCTA 537
| ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 524 AACACACAGAATTTGATGAGGTTGCTGCAGAAGCACCTACTGGATTTACCGAGTTACCTA 583
Query 538 CTTGTCCAATATGTCTTGAGAGATTAGATCCTGACACCAGTGGTATAGTTAGCACTCTTT 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CGTGTCCAATATGTCTTGAGAGATTAGATCCTGACACCAGTGGTATAGTTAGCACTCTTT 643
Query 598 GTGATCACTCCTTTCAGTGTTCTTGCACTTCAAAATGGACTTATCTGTCCTGTCAAGTTT 657
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 644 GTGATCACTCGTTTCAGTGTTCTTGCACTTCGAAATGGACTTATCTGTCTTGTCAGGTTT 703
Query 658 GTCGATTGTGTCAACAACAAGATGAGATATTAAGCTGTTCTGTTTGTGGAAAAACAGAGA 717
|||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||
Sbjct 704 GTCGATTGTGTCAACAGCAAGATGAGATATTAAACTGTTCTATTTGTGGAAAAACTGAGA 763
Query 718 ATGTATGGGCATGTCTTGTCTGTGGCTTCTTAGGTTGTGGAAGATACAAGGAAGGGCATT 777
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 764 ATGTATGGGCATGCCTTGTCTGTGGCTTCGTAGGTTGTGGAAGATACAAGGAAGGGCATT 823
Query 778 CTATCAGGCACTGGAAAGAAACGCATCACTGCTATTCTTTTGATTTGCGAACACAACAAA 837
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 824 CTATTAGGCACTGGAAAGAAACGCATCACTGCTATTCTCTTGATTTGCGAACACAACAAA 883
Query 838 TCTGGGATTATGTTGGTGACAGCTATGTTCATCGGTTAAATCATTCAAAAATTGATGGAA 897
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 884 TCTGGGATTATGTTGGTGACAGCTATGTTCATCGGTTAAACCATTCAAAAATTGATGGAA 943
Query 898 AGTCAGTAGAGATGAACACCCGTTGTCTGTCACACGAAGGGGACTGTGGTCTCTGTGAGT 957
||||||||||||||| |||| |||||||||||||| | ||||||||||| ||||||||||
Sbjct 944 AGTCAGTAGAGATGAGCACCAGTTGTCTGTCACACCAGGGGGACTGTGGCCTCTGTGAGT 1003
Query 958 GTAGTGAGGATACAGGAATTAGCGGAGCCATCTTTAACAGCAAAGTTGATTCAATTGTAA 1017
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1004 GTAGTGAGGATACAGGAATTAGCGGAGCTATCTTTAACAGCAAAGTTGATTCAATTGTAA 1063
Query 1018 TCGAGTATAATGACCTCCTTGCAAGTCAACTTAAGGGACAGCGACAGTACTATGAATCTC 1077
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1064 TCGAGTATAATGACCTTCTTGCAAGTCAACTAAAGGGACAGCGACAGTACTATGAATCTC 1123
Query 1078 TCATTGTTGAGGCGAGAAGCAAGCAGGAAAGTAGTATTGCCGAAGCAGTTGAGCAAATTG 1137
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1124 TCATTGTTGAGGCGAGAAGCAAGCAAGAAAGTAGTATTGCCGAAGCAGTAGAGCAAATTG 1183
Query 1138 TTGTTAACAAAATGCAGGAGCTTCAGAATGAGATTGAAAAATGTGAAGAGGAAAAAAGTG 1197
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1184 TTGTTAACACAATGCAGGAGCTTCAGAATAAGATTGAAAAATGTGAAGAGGAAAAAAGTG 1243
Query 1198 GTATTACTGAGGTGAATAGAAAACTTATAAAAGAGCAGGAAACTTGGCGGAAGAAGGCCA 1257
|||| ||||| || || | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1244 GTATCACTGAAGTTAACACAAAACTTATAAAAGAGCAGGATACTTGGCGGAAGAAGGCCA 1303
Query 1258 AAGAAATAGAAGAGAGGGAAGCTGCATTGCTAGGATCAAAAGACGAGATGCTAGCTGATC 1317
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1304 AAGAAATAGAAGAGAGGGAAGCTGCATTGCTAGGATCAAAAGACGAGATGATAACTGATC 1363
Query 1318 TTCAAGAACAGATAAGAGATATTACGGTCTTCATTGAAGCCAAGAAAACCTTAAAGAAGA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TTCAAGAACAGATAAGAGATATTACGGTCTTCATTGAAGCCAAGAAAACCTTAAAGAAGA 1423
Query 1378 TGTCATCAGATTCGGATGGTATACGCGAAGGAACCGTCTTACCAGTGCCTATCAA-CGCC 1436
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1424 TGTCATCAGATACGGATGGTATACGCGAAGGAACCGTCTTACCAGTGCCTATCAGTC-CC 1482
Query 1437 GAGCCAGTTTCCTCAGTTAGAAGGCAGAAGAAGCCAAACCGGAGAAAGTAAAGAGCAGAT 1496
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 1483 GAGCCAGTTTCCTCAGTTAGAAGGCAAAAGAAGTCAAACCGGAGAAAGTAAAGAACAGAT 1542
Query 1497 TTG-TGATGCTT 1507
||| | ||||||
Sbjct 1543 TTGGT-ATGCTT 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5