BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935081
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42200.1 | Symbols: SPL9, AtSPL9 | squamosa promoter binding... 1266 0.0
AT1G69170.1 | Symbols: | Squamosa promoter-binding protein-lik... 87.9 2e-16
> AT2G42200.1 | Symbols: SPL9, AtSPL9 | squamosa promoter binding
protein-like 9 | chr2:17587407-17589630 FORWARD LENGTH=1501
Length=1501
Score = 1266 bits (685), Expect = 0.0
Identities = 771/813 (95%), Gaps = 3/813 (0%)
Strand=Plus/Plus
Query 1 CTGAGTAAGAGGAAACCAAAATGGAGATGGGTTCCAACTCGGGTCCGGGTCATGTTCCGG 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 175 CTGAGTAAGAGGAAACCAACATGGAGATGGGTTCCAACTCGGGTCCGGGTCATGGTCCGG 234
Query 61 GTCAGGCAGAGTCTGGTGGTTCCTCCACTGAGTCTTCCTCTTTCAGTGGAGGGCTCATGT 120
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 235 GTCAGGCAGAGTCGGGTGGTTCCTCCACTGAGTCATCCTCTTTCAGTGGAGGGCTCATGT 294
Query 121 TTGGCCAGAAGATCTACTTCGAGGACGGTGGTGGTGGATCCGGGTCTTCTTCCTCTGGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 295 TTGGCCAGAAGATCTACTTCGAGGACGGTGGTGGTGGATCCGGGTCTTCTTCCTCAGGTG 354
Query 181 GT--T-CAAACAGACGTGTCCGTGGAGGCGGGTCGGGTCAGTCGGGTCAGATACCAAGAT 237
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 GTCGTTCAAACAGACGTGTCCGTGGAGGCGGGTCGGGTCAGTCGGGTCAGATACCAAGGT 414
Query 238 GCCAAGTGGAAGGCTGTGGAATGGATCTAACCAATGCAAAAGGTTATTACTCGAGGCACA 297
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 415 GCCAAGTGGAAGGTTGTGGGATGGATCTAACCAATGCAAAAGGTTATTACTCGAGACACC 474
Query 298 GAGTTTGTGGAGTGCACTCTAAAACACCTAAAGTCATTGTTTCTGGTATCGAACAGAGGT 357
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 475 GAGTTTGTGGAGTGCACTCTAAAACACCTAAAGTCACTGTGGCTGGTATCGAACAGAGGT 534
Query 358 TTTGTCAACAGTGCAGCAGGTTTCATCATCTTGCGGAGTTTGACCTAGAGAAAAGGAGTT 417
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 535 TTTGTCAACAGTGCAGCAGGTTTCATCAGCTTCCGGAATTTGACCTAGAGAAAAGGAGTT 594
Query 418 GCCGTAGGAGACTCGCTGGTCATAATGAACGACGGAGGAAGCCACAGCCTGCCTCTCTCT 477
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 595 GCCGCAGGAGACTCGCTGGTCATAATGAGCGACGAAGGAAGCCACAGCCTGCGTCTCTCT 654
Query 478 CTGTGTTATCTTCTCGTTACGGGAGGATCGCACCATCACTTTACGGAAATGCTGATGCTG 537
|||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||||
Sbjct 655 CTGTGTTAGCTTCTCGTTACGGGAGGATCGCACCTTCGCTTTACGAAAATGGTGATGCTG 714
Query 538 GAATGAATGGAAGCTTTCTTGGGAACCAAGGGATGGGATGGCCTAGTGAAAGAACGTTGG 597
|||||||||||||||||||||||||||||| ||| |||||||| ||| |||||| ||||
Sbjct 715 GAATGAATGGAAGCTTTCTTGGGAACCAAGAGATAGGATGGCCAAGTTCAAGAACATTGG 774
Query 598 ATACAAGAGTGATGAGACGGCCCGTGTCATCACCGTCGTGGCAGATCAATCCAATGAATG 657
|||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 775 ATACAAGAGTGATGAGGCGGCCAGTGTCGTCACCGTCATGGCAGATCAATCCAATGAATG 834
Query 658 TATTTAGTCAAGGTTCAGTTAATGGAGGAGGGACAAGCTTCTCATCTCCAGAGATTATGG 717
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 835 TATTTAGTCAAGGTTCAGTTGGTGGAGGAGGGACAAGCTTCTCATCTCCAGAGATTATGG 894
Query 718 ACACTAAACTAGAGAGCTACAAGGGAATTGGGGACTCAAACTGTGCTCTCTCTCTTCTGT 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 895 ACACTAAACTAGAGAGCTACAAGGGAATTGGCGACTCAAACTGTGCTCTCTCTCTTCTGT 954
Query 778 CAAATCCACATCAACCACAGGACAACAACAACA 810
||||||||||||||||||| |||||||||||||
Sbjct 955 CAAATCCACATCAACCACATGACAACAACAACA 987
Score = 510 bits (276), Expect = 1e-143
Identities = 312/329 (95%), Gaps = 4/329 (1%)
Strand=Plus/Plus
Query 785 ACATCAACCACAGGACAACAACAACACATGGCGAGCTTCTTCAGGTTTTGGCCCCATGGC 844
||| |||| ||| |||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 997 ACAACAACAACA--ACAACAACAATACATGGCGAGCTTCTTCAGGTTTTGGCCCGATGAC 1054
Query 845 GGTTACAATGGCTCAGCCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTG 904
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GGTTACAATGGCTCAACCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTG 1114
Query 905 GGTATTCAAGGACGATGATAATGATATGTCTCCTGTTTTGAATTTGGGTCCG-TACACCG 963
||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1115 GGTATTCAAGGACAATGATAATGATATGTCTCCTGTTTTGAATTTAGGT-CGATACACCG 1173
Query 964 AGCCAGATAATTGTCAGATAAGCAGTGGCACAACAATGGGTGAGTTCGAGTTATCAGACC 1023
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |
Sbjct 1174 AGCCAGATAATTGTCAGATAAGTAGTGGCACGGCAATGGGTGAGTTCGAGTTATCTGATC 1233
Query 1024 ACCATCATCAAAGTAGGAGACAGTACATGGAAGATGAGAACACAAGGGCTTATGACTCTT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 ACCATCATCAAAGTAGGAGACAGTACATGGAAGATGAGAACACAAGGGCTTATGACTCTT 1293
Query 1084 CTTCTCACCATACCAACTGGTCTCTCTGA 1112
|||||||||||||||||||||||||||||
Sbjct 1294 CTTCTCACCATACCAACTGGTCTCTCTGA 1322
> AT1G69170.1 | Symbols: | Squamosa promoter-binding protein-like
(SBP domain) transcription factor family protein | chr1:26005068-26007263
FORWARD LENGTH=1829
Length=1829
Score = 87.9 bits (47), Expect = 2e-16
Identities = 104/131 (79%), Gaps = 6/131 (5%)
Strand=Plus/Plus
Query 330 GTCATTGTTTCTGGTATCGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCAT--CATC 387
||||| ||| |||| | |||||||||||||||||||||||||||||||||||| | ||
Sbjct 852 GTCATAGTTAATGGTCTTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTCCTC 911
Query 388 TTGCGGAGTTTGACC-TAGAGAAAAGGAGTTGCCGTAGGAGACTCGCTGGTCATAATGAA 446
| | |||||||| | | ||||| |||||| | ||| || | || ||||| ||||||
Sbjct 912 T--CAGAGTTTGATGATGGC-AAAAGAAGTTGCAGAAGGCGATTAGCCGGTCACAATGAA 968
Query 447 CGACGGAGGAA 457
||| | |||||
Sbjct 969 CGAAGAAGGAA 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5