BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935089
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1781 0.0
> AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17611185-17613519 REVERSE
LENGTH=1679
Length=1679
Score = 1781 bits (964), Expect = 0.0
Identities = 1057/1103 (96%), Gaps = 2/1103 (0%)
Strand=Plus/Plus
Query 21 TTAATGGATTCAAATAATCATCTCTACGACCCGAATCACACCGGGTCGGGTCTTCTTCGT 80
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 354 TTAATGGATTCAAATAATCATCTCTACGACCCGAATCCCACCGGGTCGGGTCTTCTTCGT 413
Query 81 TTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACGACGACAAGATTGGATTC 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 414 TTTAGATCAGCTCCGAGCTCTGTTCTCGCCGCTTTTGTTGACGACGACAAGATTGGTTTC 473
Query 141 GACTCCGATAGGTTGCTTTCAAGATTCGTTAGCTCTAATGGCGTAAAC-GACGATCTGGG 199
||||||||||||||||||||||||||||| | |||||||||||| ||| || ||||||||
Sbjct 474 GACTCCGATAGGTTGCTTTCAAGATTCGTGACCTCTAATGGCGTTAACGGA-GATCTGGG 532
Query 200 TTCACCTAAATTCGAGGATAAGTCTCCGGTTTCGTTAACGAACACCTCTGTTTCATACGC 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTCACCTAAATTCGAGGATAAGTCTCCGGTTTCGTTAACGAACACCTCTGTTTCATACGC 592
Query 260 CGCCACTCTGCCGCCGCCACCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCA 319
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGCCACTCTGCCGCCACCGCCGCAGCTTGAGCCGTCGAGTTTTCTGGGTTTGCCGCCGCA 652
Query 320 TTACCCGAGGCAGAGTAAAGGGATGATGAACTCGGTTGGTTTGGATCAGTTTCTGGGTAT 379
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 653 TTACCCGAGGCAGAGTAAAGGGATAATGAACTCGGTTGGTTTGGATCAGTTTCTCGGTAT 712
Query 380 GAATAATCATTACACCAAACCAGTTGAATCCAATCTTCTCCGGCAAAGCAGCTCGCCCGC 439
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 713 CAATAATCATCACACCAAACCAGTTGAATCTAATCTTCTCCGTCAAAGCAGCTCTCCAGC 772
Query 440 CGGAATGTTCACTAACCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATATGATGAA 499
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 773 CGGAATGTTTACTAATCTCTCTGACCAAAACGGTTATGGTTCAATGAGGAATTTGATGAA 832
Query 500 TTACGAAGAAGATGAAGAGAGTCCATCTAACTCCAACGGATTAAGACGCCATTGCAGCCT 559
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 833 TTACGAAGAAGATGAAGAGAGTCCATCTAATTCCAATGGATTAAGACGCCATTGCAGTCT 892
Query 560 CTCTTCAAGGCCACCTCCTTCACTGGGAATGCTCTCTCAAATACCTGAAATCGCACCCGA 619
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 893 CTCTTCAAGGCCACCTTCTTCACTTGGAATGCTTTCTCAAATACCTGAAATCGCACCCGA 952
Query 620 AACGAATTTTCAATATAGCCATTGGAATGATCCATCCAACTTCATTGATAACTTATCCTC 679
||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 953 AACTAATTTTCCATATAGCCATTGGAATGATCCATCCAGCTTTATTGATAACTTATCCTC 1012
Query 680 CCTTAAAAGAGAAACAGAGGACGATGGAAAATTGTTTCTCGGAGCTCAGAACGGAGAGTC 739
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ACTTAAAAGAGAAGCCGAGGACGATGGAAAATTGTTTCTCGGAGCTCAGAACGGAGAGTC 1072
Query 740 CGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGTCTACCCAAGTCCTCATCAACAGC 799
|||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct 1073 CGGGAATCGTATGCAGTTACTGTCGCATCATTTGAGCCTACCAAAGTCATCATCGACAGC 1132
Query 800 GTCGGACATGGTTTCAGTAGATAAGTATCTTCAGTTGCAAGATTCTGTTCCTTGTAAAAT 859
||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 1133 CTCGGACATGGTTTCAGTGGATAAGTATCTTCAGCTACAAGATTCTGTTCCTTGTAAAAT 1192
Query 860 TAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAAC 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CAGAGCCAAACGTGGTTGCGCTACACATCCTCGAAGCATCGCTGAACGGGTAAGAAGAAC 1252
Query 920 GCGGATAAGCGAGCGAATGAGGAAATTACAAGAGCTTGTTCCTAACATGGACAAGCAAAC 979
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1253 GCGGATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGCAAAC 1312
Query 980 GAACACTTCGGATATGTTGGATTTAGCAGTGGATTACATCAAAGATTTACAAAGACAGTA 1039
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1313 CAACACTTCGGATATGTTGGATTTAGCTGTGGATTACATCAAAGATTTACAAAGACAGTA 1372
Query 1040 TAAGATTTTAAACGACAACAGAGCTAACTGCAAGTGTATGAACAAGGAGAAGAAGTCAAT 1099
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1373 TAAGATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAAT 1432
Query 1100 ATAGGGCGCAACAAAGTGTGTAG 1122
|||||||||||||||||||||||
Sbjct 1433 ATAGGGCGCAACAAAGTGTGTAG 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5