BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935092
Length=385
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 651 0.0
AT3G57785.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 350 7e-96
> AT2G42310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G57785.1);
Has 115 Blast hits to 115 proteins in 48 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17625212-17625889
FORWARD LENGTH=678
Length=678
Score = 651 bits (352), Expect = 0.0
Identities = 374/385 (97%), Gaps = 0/385 (0%)
Strand=Plus/Plus
Query 1 GAAATATCGGAACCAAAGCGATGCCGTCGACGCAGTCCTTGACCGTCGCAGCGAAGACGC 60
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 GAAATATCTGAACCAACGCGATGCCGTCGACGCAGTCCTTGACCGTCGCAGCGAAGACGC 79
Query 61 TACGAAATCGGATCTTCTCTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TACGAAATCGGATCTTCTCTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGA 139
Query 121 CGCCAGGTCACGAGGAGCGGCCCAAGGGTTACTTTATGAACCGGACTCCTCCGGCACCAG 180
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 140 CGCCAGGTCACGAGGAGCGACCTAAGGGTTACTTTATGAACCGTACTCCTCCGGCACCAG 199
Query 181 GACAGTCGCGAAAATGGGAAGATTGGGAGCTTCCTTGTTACATCACTAGCTTCCTCACAA 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 200 GACAGTCGCGAAAATGGGAAGATTGGGAGCTTCCTTGTTACATCACCAGCTTCCTTACAA 259
Query 241 TTGTTATCCTCGGCGTGGGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTGTTATCCTCGGCGTTGGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTC 319
Query 301 ATCAGAAAGCTTTAGAGCGTCTTGAGATGGAGAAGCTCGCAACCGCTGGAGATTCGTCTG 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 320 ATCAGAAAGCTTTAGAGCGTCTTGAGATGGAGAAGCTCGCGACCGCTGGAGATTCATCTG 379
Query 361 ATTAAGCATCACCGTTTGATCTCCG 385
|||||||||||||||| ||||||||
Sbjct 380 ATTAAGCATCACCGTTGGATCTCCG 404
> AT3G57785.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G42310.1);
Has 121 Blast hits to 121 proteins in 51 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404574-21405217
REVERSE LENGTH=644
Length=644
Score = 350 bits (189), Expect = 7e-96
Identities = 297/349 (85%), Gaps = 8/349 (2%)
Strand=Plus/Plus
Query 21 ATGCCGTCGACGCAGTCC-TTGACCGTCGCAGCGAAGACGCTACGAAATCGGATCTTC-T 78
||| |||||||| || || |||| ||||||||||||||||| ||||| |||||| | |
Sbjct 39 ATGGCGTCGACGAAG-CCATTGATTGTCGCAGCGAAGACGCTCCGAAACCGGATCCACTT 97
Query 79 CTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGACGCCAGGTCACGAGGAGC 138
| | |||||||| ||||| | ||||| || ||||||||||| || |||||||| || |
Sbjct 98 C-CGATCTGGATCCACATCTACTGGTCCAAGCCGGTGGGCGACACCGGGTCACGAAGAAC 156
Query 139 GGCCCAAGGGTTACTTT-ATGAACCGGACTCCTCCGGCACCAGGACAGTCGCGAAAATGG 197
| ||||| || || ||| |||||||||||||| ||| | |||||||||||||| || |||
Sbjct 157 GACCCAAAGGATA-TTTCATGAACCGGACTCCGCCGCCTCCAGGACAGTCGCGCAAGTGG 215
Query 198 GAAGATTGGGAGCTTCCTTGTTACATCACTAGCTTCCTCACAATTGTTATCCTCGGCGTG 257
||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct 216 GAAGATTGGGAGCTTCCATGTTACATCACAAGCTTCCTCACGATTGTAATCCTCGGAGTG 275
Query 258 GGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTCATCAGAAAGCT-TTAGA 316
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||
Sbjct 276 GGTCTCAATGCCAAACCTGATCTTTCAATCGAGACCTGGGCTCACCAGAAAGCTCTT-GA 334
Query 317 GCGTCTTGAGATGGAGAAGCTCGCAACCGCTGGAGATTCGTCTGATTAA 365
||| || |||||||||||||| ||| | || |||||||| |||| ||||
Sbjct 335 GCGCCTCGAGATGGAGAAGCTTGCATCTGCCGGAGATTCATCTGGTTAA 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18146657389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5