BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935096

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42340.1 | Symbols:  | unknown protein; Has 11 Blast hits to...   303    7e-82


> AT2G42340.1 | Symbols:  | unknown protein; Has 11 Blast hits 
to 11 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa 
- 0; Fungi - 2; Plants - 6; Viruses - 0; Other Eukaryotes 
- 1 (source: NCBI BLink). | chr2:17636323-17637727 REVERSE 
LENGTH=891
Length=891

 Score =  303 bits (164),  Expect = 7e-82
 Identities = 229/260 (88%), Gaps = 6/260 (2%)
 Strand=Plus/Plus

Query  79   CACAATCCGAAATACTTGATCCTGCTGATACTGAAACAATTGAAGC-ACTGAAGAAGGAG  137
            |||||||| || |||||||||||||||||  |||| |||| ||| | | |||||||||||
Sbjct  422  CACAATCCCAACTACTTGATCCTGCTGATGTTGAAGCAATCGAATCGA-TGAAGAAGGAG  480

Query  138  TTTTCAACTGCTTTGGGCTTGTTGAAGATCGTACAACAGCTACACAAAGTATTATTCCCT  197
             |||||||| || ||| ||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct  481  ATTTCAACTACTATGGACTTGTTGAAAATCGTACTACAGCTACACAAAGTTTTATTCCCT  540

Query  198  ACAAGAGTTGGAGCTGGACAAGTGAGAGTTGCAGCTGGGAACAACATCAGTGGACAAGTG  257
            ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  541  ACAAGAGTTGGAGCTGGGCAAGTGAGACTTGCAGCTGGGAACAACATCAGTGGACAAGTG  600

Query  258  AAAGCTACTCCTGGGAACAACAT-ATGTGGACAAGTGAGAGCTTCTGCTGGGAACA-TCA  315
            | |||| || ||||||||| ||| | |||| |||||||||||| | |||||||||| | |
Sbjct  601  AGAGCTTCTGCTGGGAACATCATCA-GTGGGCAAGTGAGAGCTGCAGCTGGGAACAAT-A  658

Query  316  TTAGTGGGCAAGTGAGAGCT  335
            | ||||| ||||||||||||
Sbjct  659  TCAGTGGACAAGTGAGAGCT  678


 Score =  285 bits (154),  Expect = 2e-76
 Identities = 176/186 (95%), Gaps = 4/186 (2%)
 Strand=Plus/Plus

Query  268  CTGGGAACAACAT-ATGTGGACAAGTGAGAGCTTCTGCTGGGAACATCATTAGTGGGCAA  326
            ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  575  CTGGGAACAACATCA-GTGGACAAGTGAGAGCTTCTGCTGGGAACATCATCAGTGGGCAA  633

Query  327  GTGAGAGCTTCTGCTGGGAAC-ATCATCAGTGGGCAAGTGAGAGCTGGGAATATCATCAG  385
            ||||||||| | ||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct  634  GTGAGAGCTGCAGCTGGGAACAAT-ATCAGTGGACAAGTGAGAGCTGGGAATATCATCAG  692

Query  386  TGAACAAGCAGGACTAAGGAAGCATGTAGGAAACCGATGGGAATGAAGGAGCCAGTAACG  445
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  693  TGAACAAGCAGGGCTAAGGAAGCATGTAGGAAACCGATGGGAATGAAGGAGCCAGTGACG  752

Query  446  CTTTGG  451
            ||||||
Sbjct  753  CTTTGG  758


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 83/90 (92%), Gaps = 2/90 (2%)
 Strand=Plus/Plus

Query  284  TGGACAAGTGAGAGCTT-CTGCTGGGAACATCATTAGTGGGCAAGTGAGAGCTTCTGCTG  342
            ||| ||||||||| ||| | |||||||||| ||| ||||| |||||||||||||||||||
Sbjct  555  TGGGCAAGTGAGA-CTTGCAGCTGGGAACAACATCAGTGGACAAGTGAGAGCTTCTGCTG  613

Query  343  GGAACATCATCAGTGGGCAAGTGAGAGCTG  372
            ||||||||||||||||||||||||||||||
Sbjct  614  GGAACATCATCAGTGGGCAAGTGAGAGCTG  643



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5