BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935099 Length=399 Score E Sequences producing significant alignments: (Bits) Value AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:1780147... 183 8e-46 AT2G44020.1 | Symbols: | Mitochondrial transcription terminati... 145 4e-34 > AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:17801471-17806049 REVERSE LENGTH=3249 Length=3249 Score = 183 bits (99), Expect = 8e-46 Identities = 115/123 (93%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38 AGGAGGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTATGACCCACGAGCT 97 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1103 AGGAAGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTATGACCCTCGAGCT 1162 Query 98 AAAATTATCAAGAACCTGGCAGATAAAGTATTTTCCATTGTTGGAAGGGATCTTCTAATT 157 ||| | |||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1163 AAAGTCATCAAGAACCTGGCTGATGAAGTATTTTCCATTGTTGGAAAGGATCCTCTAATT 1222 Query 158 GAG 160 ||| Sbjct 1223 GAG 1225 > AT2G44020.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr2:18217559-18219385 REVERSE LENGTH=1827 Length=1827 Score = 145 bits (78), Expect = 4e-34 Identities = 94/102 (92%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 245 AAGATGTCTACACAACAGTACTTATTCTGTTTGAACCTCAAGATTGATCTTGAAGGATTT 304 ||||||||||||||||||||||| ||| | ||||| ||||||||||||| |||||||||| Sbjct 1092 AAGATGTCTACACAACAGTACTTTTTCAGCTTGAAGCTCAAGATTGATCCTGAAGGATTT 1151 Query 305 GCTCGTGTGGTAGAGAAAATGCCACAAATTGTAAGCCTGAAG 346 |||||||||||||||||||||||||| |||||||| || ||| Sbjct 1152 GCTCGTGTGGTAGAGAAAATGCCACAGATTGTAAGTCTTAAG 1193 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18850405875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5