BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935099

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:1780147...   183    8e-46
  AT2G44020.1 | Symbols:  | Mitochondrial transcription terminati...   145    4e-34


> AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:17801471-17806049 
REVERSE LENGTH=3249
Length=3249

 Score =  183 bits (99),  Expect = 8e-46
 Identities = 115/123 (93%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  38    AGGAGGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTATGACCCACGAGCT  97
             |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1103  AGGAAGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTATGACCCTCGAGCT  1162

Query  98    AAAATTATCAAGAACCTGGCAGATAAAGTATTTTCCATTGTTGGAAGGGATCTTCTAATT  157
             ||| | |||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||
Sbjct  1163  AAAGTCATCAAGAACCTGGCTGATGAAGTATTTTCCATTGTTGGAAAGGATCCTCTAATT  1222

Query  158   GAG  160
             |||
Sbjct  1223  GAG  1225


> AT2G44020.1 | Symbols:  | Mitochondrial transcription termination 
factor family protein | chr2:18217559-18219385 REVERSE 
LENGTH=1827
Length=1827

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 94/102 (92%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  245   AAGATGTCTACACAACAGTACTTATTCTGTTTGAACCTCAAGATTGATCTTGAAGGATTT  304
             ||||||||||||||||||||||| ||| | ||||| ||||||||||||| ||||||||||
Sbjct  1092  AAGATGTCTACACAACAGTACTTTTTCAGCTTGAAGCTCAAGATTGATCCTGAAGGATTT  1151

Query  305   GCTCGTGTGGTAGAGAAAATGCCACAAATTGTAAGCCTGAAG  346
             |||||||||||||||||||||||||| |||||||| || |||
Sbjct  1152  GCTCGTGTGGTAGAGAAAATGCCACAGATTGTAAGTCTTAAG  1193



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5