BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935100

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42395.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   289    2e-77


> AT2G42395.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17653138-17654034 
REVERSE LENGTH=797
Length=797

 Score =  289 bits (156),  Expect = 2e-77
 Identities = 280/335 (84%), Gaps = 27/335 (8%)
 Strand=Plus/Plus

Query  134  AGAGAGAGGAATGGC-AACAAATTCTGGAAGCTCGTTTGAGGCCGAGAAATCAGATGGG-  191
            |||||||| |||||| || ||||||||| ||||||||||| || ||||||||||| ||| 
Sbjct  45   AGAGAGAGTAATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGAGAAATCAGA-GGGA  102

Query  192  GAGTGTGTT---ACTACTACTAAAGCACAAC--AG-A---AA---G---TGAG--AGGTC  234
             ||||||||   || |||||| |||||||||  || |   ||   |   ||||  |||  
Sbjct  103  AAGTGTGTTACGACGACTACTGAAGCACAACAAAGTAGTCAACCTGTTTTGAGCAAGGAA  162

Query  235  GA--CG-ACG-GATAGATAGCTACTTGTTCTGCTATCAGAATTTCTACACTCTTCCTGAG  290
            ||   | | | || |||||||||||||||||||| | | |||||||||||||||||||||
Sbjct  163  GAGGAGAAAGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTTCTACACTCTTCCTGAG  222

Query  291  ATGATCAAGTACATGAAGGAGAATCATGGTGTAGGAGAAACCAAAGTGA-AAAGTGTTTT  349
            |||||||| | ||||||||||| ||||||||||| | ||||||  |||| |||| |||||
Sbjct  223  ATGATCAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCACTGTGACAAAG-GTTTT  281

Query  350  CAGGGAACTTTTACAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCACAGGAAAGAAT  409
            ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  282  CAGGGAACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCTCAGAAAAGAAT  341

Query  410  GAAAACAAGAACAACAACAACTACTTGAACAGAGG  444
            |||  |||||||||||||||| |||||||||||||
Sbjct  342  GAAGGCAAGAACAACAACAACAACTTGAACAGAGG  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21816203066


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5