BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935101

Length=1083
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12090.1 | Symbols:  | Protein kinase superfamily protein | ...   106    5e-22


> AT5G12090.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:3909703-3910877 FORWARD LENGTH=1110
Length=1110

 Score =  106 bits (57),  Expect = 5e-22
 Identities = 81/92 (88%), Gaps = 3/92 (3%)
 Strand=Plus/Plus

Query  344  GATTCGATGATAAGAGACTTCACTCGTATGATCCTTGAAGGACTT-GTCTCTATCCATAG  402
            ||| ||||||| ||||||||||| || ||||| || |||||| || ||||| || |||||
Sbjct  400  GATCCGATGATCAGAGACTTCACGCGGATGATTCTCGAAGGA-TTGGTCTCAATGCATAG  458

Query  403  TCACGGTTATGTTCATTGCGATCTCAAA-CCG  433
            |||||||||||||||||||||||||||| |||
Sbjct  459  TCACGGTTATGTTCATTGCGATCTCAAATCCG  490



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53061976065


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5