BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935106

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61260.1 | Symbols:  | Remorin family protein | chr3:2267523...  73.1    1e-12


> AT3G61260.1 | Symbols:  | Remorin family protein | chr3:22675238-22676788 
REVERSE LENGTH=891
Length=891

 Score = 73.1 bits (39),  Expect = 1e-12
 Identities = 48/52 (92%), Gaps = 1/52 (2%)
 Strand=Plus/Minus

Query  88   CTTC-ATCATTGCTCTTCAATCTCCTGCTTCCTTGTGAATCGCTGCAACCTT  138
            |||| |||||||||||||  ||| ||||||||||||||||||||||||||||
Sbjct  631  CTTCAATCATTGCTCTTCTCTCTTCTGCTTCCTTGTGAATCGCTGCAACCTT  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13471756732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5