BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935107
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42390.1 | Symbols: | protein kinase C substrate, heavy cha... 1046 0.0
> AT2G42390.1 | Symbols: | protein kinase C substrate, heavy chain-related
| chr2:17651253-17652588 REVERSE LENGTH=846
Length=846
Score = 1046 bits (566), Expect = 0.0
Identities = 660/705 (94%), Gaps = 7/705 (1%)
Strand=Plus/Plus
Query 1 ATCTACTCGAATCTTAAAACGACGTCGGTTTTACCAAATGCGAGTCAACGGATGCTGCTG 60
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 29 ATCCACTCGAATCTTAAAACGACGTCGGTTTAACCAAATGCGAGTCAACGGATGCTGCTG 88
Query 61 CAATGCGTCGTGTTGTGTTCGTTACTCGCCATCGTCGTCGTCTCCGTCGCTTCGATCTCT 120
|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||
Sbjct 89 CAATGCGTCGTGTTGTGTTCGTCACTCGCCGTCGTCGTCATCTCCGTCGCTTCGACCTCT 148
Query 121 CCCCTC---GGTGTTCACCCTTTAGATGAAAAATATTTCGACTCAGATATTATCAAATGC 177
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 149 CCCCTCGTTGGTGTTCACCCTTTAGATGAAAAGTATTTCGACTCAGATGTTATCAAATGC 208
Query 178 AAAGATGGCTCCAAATCTTTCTCTAA-AGATCGTCTCAACGACAACTTCTGCGATTGTCT 236
||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 209 AAAGATGGCTCCAAATCTTTCAC-AAGAGATCGTCTCAACGACAACTTCTGCGATTGTCT 267
Query 237 CGATGGCACCGATGAGCCTGGAACTTCAGCATGTCCAAATGGCAAATTTTACTGTAGAAA 296
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 268 CGACGGCACCGATGAGCCTGGAACTTCGGCATGTCCAAATGGCAAATTTTACTGTAGGAA 327
Query 297 CATTGGAAGTTCTCCAAAGTTTGTTTACTCTTCTCGTGTGAACGATCGTATCTGTGATTG 356
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 328 CATTGGAAGTTCTCCAAAGTTCGTTTACTCTTCTCGTGTGAATGATCGAATCTGTGATTG 387
Query 357 CTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACATGTGTAATGGG 416
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 388 CTGCGATGGAAGCGACGAGTACGAAAGTAGCATTCATTGTCCCAACACTTGTATAATGGG 447
Query 417 TGGTAACGTTAACTATATCTATAAACCTAGAACCAACCTTAAATCTATCCACTTGCAACT 476
||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 448 TGGTAACGTTAACTACATCTACAAACCTAGAGCCAACCTTAAATCTATACACTTGCAACT 507
Query 477 CGGTTCAACACTTCATCCAAAAGAGTCTTATACCATGGGGAATCTTCAGGACATGGTCAA 536
||||||||| | ||||||||| |||| |||||| || || ||||||||||||||||||||
Sbjct 508 CGGTTCAACGCCTCATCCAAAGGAGTTTTATACTATAGGAAATCTTCAGGACATGGTCAA 567
Query 537 GAATCTCCAAGGTATGAAGCTTGTCTTCGCCCTTCAGATGGTTTTTATCGGTTTCTTAGT 596
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 568 GAATCTACAAGGTATGAAGCTTGTTTTCGCTCTTCAGATGGTTTTTATCGGTTTCTTAGT 627
Query 597 GATCTTATGGATGCTTACGCGCCGTGCTCGGTCTAAGAGGA-GACGTTATCTGCTGAAGA 655
||||||||||||||||| | | ||||||||||||||||| | |||| |||||||||||||
Sbjct 628 GATCTTATGGATGCTTAGGAGTCGTGCTCGGTCTAAGAG-ACGACGCTATCTGCTGAAGA 686
Query 656 ATGTATCTCCCAGTAATAGATCAGCTAACTAACTCTCTGGAACTT 700
||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 687 ATGTACCTCCCATTAATAGATCAGCTAACTAACTCCCTGGAACTT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5