BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935111
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42430.1 | Symbols: LBD16, ASL18 | lateral organ boundaries-... 1273 0.0
> AT2G42430.1 | Symbols: LBD16, ASL18 | lateral organ boundaries-domain
16 | chr2:17663444-17665295 FORWARD LENGTH=1104
Length=1104
Score = 1273 bits (689), Expect = 0.0
Identities = 747/775 (96%), Gaps = 3/775 (0%)
Strand=Plus/Plus
Query 7 TTTGTTTGTTTCGCCGATGGCATCTTCTGGTAACGGTACAACGCCGGGAACAGGTTCACC 66
|||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 209 TTTGTTCGTTTCGCCGATGGCATCTTCCGGTAACGGTACAACGGCGGGGACAGGTTCACC 268
Query 67 GTGCGGTGCATGCAAGTTCTTGAGGAGGAAGTGCGCATCCGATTGTATATTTGCACCGTA 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ATGCGGTGCATGCAAGTTCTTGAGGAGGAAGTGCGCATCCGATTGTATATTTGCACCGTA 328
Query 127 CTTCTCATCGGAGCAAGGAGCAGCAAGATTCGCAGCTATTCACAAGGTGTTTGGAGCCAG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 329 CTTCTCATCGGAGCAAGGAGCAGCAAGATTCGCAGCTATTCACAAGGTGTTTGGAGCAAG 388
Query 187 CAACGTTTCTAAGCTCTTGCTTAATGTTCCAATCCATGATCGATGTGAAGCTGTCGTCAC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CAACGTTTCTAAGCTCTTGCTTAATGTTCCAATCCATGATCGATGTGAAGCTGTCGTCAC 448
Query 247 CATCGCCTACGAAGCTCAGGCTCGTCTTCATGACCCTGTTTATGGATGTGTCTCTCATAT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CATCGCCTACGAAGCTCAGGCTCGTCTTCATGACCCTGTTTATGGATGTGTCTCTCATAT 508
Query 307 CTTTGCCCTCCAACAACAGGTGGCTTACTTGCAAGGACAAGTCATGCAAATGAAGGCACA 366
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 509 CTTTGCCCTCCAACAACAGGTGGCTTTCTTGCAATCACAAGTCATGCAAATGAAGGCACA 568
Query 367 GATCGCCGGCCACCAGACGTCAGCCGCCGGAGATCTAAGACACAGCTCGGAGAGTACTAA 426
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 569 GATAGCTGGCCACCAGACGTCAGCCGCCGGAGATCTAAGACACAGCTCGGAAAGTACCAA 628
Query 427 CCAGTTTATGACGTGGCAACAAACTAGTGGCTCTCCGATCGGTAGTGCATACTCAACACC 486
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 629 CCAGTTTATGACGTGGCAACAAACTAGTGTCTCTCCGATCGGTAGTGCATACTCAACACC 688
Query 487 GTATAACCAGCATCAGCCTTATTACGGTCATGTAAACCCTAACAATCCGGTCTCGCCACA 546
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 689 GTATAACCATCATCAACCTTACTACGGTCATGTAAACCCTAACAATCCGGTCTCGCCACA 748
Query 547 GAGCTCGCTAGATGAATCTTTCAGCAACACGAGCAGTGACGTCACCACAACAGCTAACGT 606
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 749 GAGCTCGCTAGAAGAATCTTTCAGCAACACGAGCAGTGACGTCACCACAACAGCCAACGT 808
Query 607 GCGAGAGACTCATCA--AA-CCGGAGTAGGCGTATACGGTCACGATGGTTTAGGGTTTCA 663
||||||||||||||| || |||||| ||| ||||||||||||||||| ||||||||||
Sbjct 809 GCGAGAGACTCATCATCAAACCGGAGGAGGAGTATACGGTCACGATGGAATAGGGTTTCA 868
Query 664 CGAAGGATATCCTAACAAGAAGAGATCAGTGAGTTATTGTAGTAGCGATTTAGGTGAGCT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CGAAGGATATCCTAACAAGAAGAGATCAGTGAGTTATTGTAGTAGCGATTTAGGTGAGCT 928
Query 724 TCAGGCTTTGGCTCTTAGAATGATGAAGAACTAAGATAAGTTGGTAACTTGTGTA 778
||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 929 TCAGGCTTTGGCTCTTAGAATGATGAAGAACTAAGATAAGTTGGTAAGTTATGTA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5