BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935117
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42450.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2669 0.0
> AT2G42450.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:17672253-17675019 REVERSE LENGTH=1978
Length=1978
Score = 2669 bits (1445), Expect = 0.0
Identities = 1604/1682 (95%), Gaps = 5/1682 (0%)
Strand=Plus/Plus
Query 1 AGCCAATTCTGAGCTCGCCAATGGCTAACAGAGCATTGAACCGGCTTCTACGGAAttttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 146 AGCCAATTCTGAGCTCGCCAATGGCTAACAGAGCATTGAACCGGCTTCTACGGAATTTCT 205
Query 61 ttGTAGAAGGTTCACCGTTCAAGAAGAGACGTGGATTGTATGAAGGAGTTGTTTACAATG 120
|||||||| ||||||| |||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 206 TTGTAGAAAGTTCACCATTCAGGAAGAGAAGTGGATTGTATCAAGGAGTTGTTTACAATG 265
Query 121 TAATCAGAA-GATTTCAATCGCATTTATCAGAGTCTGGTAAGGTAGAAAAGGAGTTAGAA 179
|||||| || | ||||| || |||||||||||||| || |||||||||||||||||||||
Sbjct 266 TAATCA-AACGGTTTCAGTCTCATTTATCAGAGTCCGGGAAGGTAGAAAAGGAGTTAGAA 324
Query 180 GAGCAGGAGGCAGAGAAGAGAAAGCCTAGTAGTGTCACTTCTTTGAGGTCCGGATTAGAG 239
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 325 GAGCAGGAGGCAGAGAAGAGAAGGCCTAGTAGTGTCACTTCTTCGAGGTCCGGATTAGAG 384
Query 240 AATAGAAGACAATTTGAATCAGGAATCGACTGTGATAGCTCTAGTGATGAAGATACAGGT 299
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 385 AAAAGAAGACAATTTGAATCAGGAATCGACAATGATAGCTCTAGTGATGAAGATACAGGT 444
Query 300 GATGGAAAGTGGAAACTGGACTTAGCTTGGCTCACTAAAGCACTTGAGCCAGCTATGCAA 359
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 445 GATGGAAAGTGGAAACTAGACCTAGCTTGGCTCACTAAAGCACTTGAGCCAGCTATGCAA 504
Query 360 TTGCGTAGATGGGCTCTTCCAACAGGAGAGAAGTCAATGCCTGGTAGTCGATCTTTGTCT 419
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 505 TTACGTAGATGGGCTCTTCCAACAGGAGAGAAGTCACTGCCTGGTAGTCGATCTCTGTCT 564
Query 420 GAGATCATTGCTAGTATTCAAAGGAGTAAGCTCGGTATTGAAGGTTGGACTTTTGGTGAT 479
||||| |||||||||||||| ||||||| ||| || ||||||||||||||||||||||||
Sbjct 565 GAGATAATTGCTAGTATTCAGAGGAGTAGGCTTGGGATTGAAGGTTGGACTTTTGGTGAT 624
Query 480 CTTACAATTGGTCTCTATCTTATATACCTTCGACAAGCATCCTTGTGTCCGTTTGAGGAC 539
||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 625 CTTACTATTGGTCTCTATCTTATATACCTTAGACAAGCATCCTTGTCTCCATTTGAGGAC 684
Query 540 GTCAAGGGCGTAGAAGTTGTTTCAGAGTCTACGGTTTATGATCTGATATACAATGCCGAG 599
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 685 GTCAAGGGCGTAGAAGTTGTTTCAGAGTCTACAGTTTATGATCTGATATATAATGCGGAG 744
Query 600 TTAGCAAAAGGTTGTTACAGGGATAGTGTGAGTGGTCTTGCAAAGAACACGATGCTTCGA 659
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 745 TTAGCAAAAGGTTGTTACAGGGATAGTGTGAGTGGTCTTGCAAAGAACACCATGCTTCGA 804
Query 660 GAGAATAACATTCTTAAATTTGTGAAAGATTCAAGTGTTATGAGGCCTGGATACTACATA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GAGAATAACATTCTTAAATTTGTGAAAGATTCAAGTGTTATGAGGCCTGGATACTACATA 864
Query 720 GGAGTTGATCATCGAAGGAAACTTGTTGTCTTTGGAATACGCGGGACACATACAATTTAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GGAGTTGATCATCGAAGGAAACTTGTTGTCTTTGGAATACGCGGGACACATACAATTTAC 924
Query 780 GATCTTATCACTGACATTGTCTCTTCGAGCGATGACGAAGTCACTTTTGAAGGCTACTCA 839
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 925 GATCTTATCACTGACATTGTCTCTTCAAGCGATGAAGAAGTCACTTTTGAAGGCTACTCA 984
Query 840 ACACACTTTGGAACCGCTGAAGCTGCACGATGGTTCCTTAATCACGAATTGCAAACTATA 899
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 985 ACACACTTTGGAACTGCTGAAGCTGCACGATGGTTCCTTAACCACGAATTGCAAACTATA 1044
Query 900 AGAAGATGCTTAGCGAAATACGAGGGATACAAGCTAAGGCTTGTTGGTCATTCTCTCGGC 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1045 AGAAGATGCTTAGCGAAATACGAGGGATACAAGCTACGGCTTGTTGGTCATTCTCTCGGC 1104
Query 960 GGTGCTATAGCCTCGTTAATGGCGATAATGCTCAGGAAAATGCCAAGGGAGGAATTGGGA 1019
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1105 GGTGCTATAGCCTCCTTAATGGCGATAATGCTCAAGAAAATGCCAAGGGAGGAATTGGGA 1164
Query 1020 TTCGATGCTGAAAGTATTTCAGCCGTTGGGTATGCGACACCTCCTTGTGTTTCTAAAGAG 1079
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1165 TTCGATGCTGAAATTATTTCAGCCGTTGGGTATGCGACACCTCCTTGTGTTTCCAAAGAG 1224
Query 1080 CTTGCAGAGAATTGCTCTGATTTTGTAACAACTATTGTAATGCAGGACGATATTATACCT 1139
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1225 CTTGCAGAGAATTGCTCTGAGTTTGTAACAACTATTGTAATGCAGGACGACATTATACCT 1284
Query 1140 AGACTCAGTGCAGCTTCTCTAGCGAGATTAAGGAATGAAATCCTTCAGACCGATTGGACA 1199
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1285 AGACTCAGTGCAGCTTCTCTAGCGAGATTGAGGAATGAAATCCTTCAGACAGATTGGACA 1344
Query 1200 AGTATAATTGAGAAGGAAGAATGGAAGAACATAATGGATTTGGTAACAAACGCAAAACAA 1259
||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1345 AGTGTAATTGAGAAGGAAGAATGGAAGAACGTTTTGGATTTGGTAACAAACGCAAAACAA 1404
Query 1260 GTTGTCACCTCTGTGCAAGACGTAGCTCGAAAAGTTTCTGATTATGCAAACTTCGGAAAC 1319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1405 GTTGTCACCTCTGTGCAAGACGTAGCTAGAAAAGTTTCTGATTATGCAAACTTCGGAAAC 1464
Query 1320 AGAAAAGAAGTTCCTGAAATCCCGTCATCCAAGAACAACCAGTCTGGGACT-TTAATCTC 1378
| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1465 AAAAAAGAAGTTCCAGAAATCCCGTCATCCAAGAACAACCAGTCTGGGA-TATTAATCTC 1523
Query 1379 TGAATCTACCACTAAAGATGTTGTTAAATTGCCAGAAGAGTTATATGTACCGGGCGCAGT 1438
||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1524 TGACTCTACTACTAAAGATGTTGTGAAATTGCCAGAAGAGTTATATGTACCGGGTGCAGT 1583
Query 1439 TTACTATCTAATGAGGAACCTAAGAGGAAACCCGAAAATCGCAGCAGGAAAACAAGTAGA 1498
||||||||| ||||||| ||||||||||| |||||||| | |||||||||||||||||||
Sbjct 1584 TTACTATCTGATGAGGAGCCTAAGAGGAACCCCGAAAAGCTCAGCAGGAAAACAAGTAGA 1643
Query 1499 ATACTATAGTCTATGGAAGAGAGATCCAGGACAACATTTTCAGAGGATACTTCTCTCAGG 1558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1644 GTACTATAGTCTATGGAAGAGAGATCCAGGACAACATTTTCAGAGGATACTTCTCTCCGG 1703
Query 1559 TAATTTCATTACAGACCATAAATGCGATAGCCATTACTACGCTCTGCGAGATGTGCTCAA 1618
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1704 TAATTTCATTACAGACCATAAATGTGATAGCCATTACTACGCTCTGCGAGATGTGCTCAA 1763
Query 1619 AGGATTTCCCAGTTTCATCGACGAAAGCATCTTTAAGAAGAGATGTAAGTGAAACAGAAT 1678
||||||||||||||||||| |||||||||||||||||||| || || ||||| ||||
Sbjct 1764 AGGATTTCCCAGTTTCATCAACGAAAGCATCTTTAAGAAGTGAAATAC-TGAAATGGAAT 1822
Query 1679 CT 1680
||
Sbjct 1823 CT 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83533706880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5