BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935128
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685... 309 4e-83
> AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685805-17689928
REVERSE LENGTH=2309
Length=2309
Score = 309 bits (167), Expect = 4e-83
Identities = 386/488 (79%), Gaps = 29/488 (6%)
Strand=Plus/Plus
Query 1 ACGAAAGCG-TTTTCATCAAATATGTGGAATCAAAAGCCGAGTTACAGATTTGAGATAGA 59
||||||||| |||| ||| ||||||||||||||||||| ||| || |||||||||||
Sbjct 56 ACGAAAGCGTTTTTGGTCAGCTATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGA 115
Query 60 TAACTTCTCGGAGAAGAAATCTGTCATAACGTCTCAGGTGTTCGTGAGCGGCGGATGCGA 119
||||||||||||||||||| ||| ||| ||||| ||| |||||||| || ||||||||
Sbjct 116 TAACTTCTCGGAGAAGAAAGATGTGATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGA 175
Query 120 ATGGTGTC-TCAAACTTTATCCAAAGGGAGATGGAGTTGTTAAACTTGATGATTACTTGT 178
||||| || | | || ||||| |||||| | | ||| |||| | |||||| || |||
Sbjct 176 ATGGT-TCCTTTACCTCTATCCGAAGGGACA-G-AGTC-TTAA--T-GATGATCACATGT 228
Query 179 CTTTGTA-CGTGAACGTTGCAAATCCTAAATCTTTGAGAAGTGGATGGAAAAGGATTGCT 237
||||||| | || |||||||||| |||||| ||| |||||||||||||| ||| ||||
Sbjct 229 CTTTGTATC-TGTCCGTTGCAAATAGTAAATCCTTGGGAAGTGGATGGAAACGGAGTGCT 287
Query 238 AACTTTTACTTC-CTTGTGTTGAATCAATCCGACAAAGAGCTCTACAGATCACCAATTGG 296
|| ||||||||| || ||| ||||| |||| |||||||| |||||||||||| | |||
Sbjct 288 AAATTTTACTTCTCT-GTGCTGAATGAATCTGACAAAGAACTCTACAGATCAACTATT-- 344
Query 297 AGGACAAGAAAGCACCCCGTTTTGCGCTGAGAG-TCCATCCTGGGGT-TGGCGATATTTC 354
|| |||||| | | |||||||| | || | || | |||||||| | ||| | |
Sbjct 345 AGC-CAAGAATTCTGTCTGTTTTGCGTTCAG-GCTCTAGCCTGGGGTATC-CGAAAGG-C 400
Query 355 TT-GTCTCTTAGCAAGTTTCAG-AAAACAGGACTTTTGGAGGACGACAGACTCATCATTG 412
|| | |||||||||||||| || |||| ||| |||||||| | |||| ||||||| |||
Sbjct 401 TTTGCCTCTTAGCAAGTTTGAGGAAAA-AGGGTTTTTGGAGAAGGACAAACTCATCGTTG 459
Query 413 AAGTCTACATTAATA-TTGTTGAAGCTTTTGATGGAGAAGAAGAAGATGTATCATCAGAG 471
|||||||||| || | || ||||||| | |||||||||| | || ||||||| | ||
Sbjct 460 AAGTCTACATCAAAAATT-TTGAAGCAGTGGATGGAGAAGGCGGAGGTGTATCA--A-AG 515
Query 472 AAGGAGGA 479
||||||||
Sbjct 516 AAGGAGGA 523
Score = 215 bits (116), Expect = 9e-55
Identities = 274/343 (80%), Gaps = 40/343 (12%)
Strand=Plus/Plus
Query 796 CTTGAGCCGG-TGG-ATTTGGACTTTAAGATGGACCCTTTGAAGACAAAGATTGAGGAGG 853
|||||| || ||| |||| |||| ||| ||||| ||||||| ||||| |||| ||
Sbjct 885 CTTGAG-GGGATGGAATTT-GACTCCAAGTTGGACAGTTTGAAGTCAAAGCTTGATGAAA 942
Query 854 TTCCCTTGGAGAGGAAGAAATCAGATGATGCTGATTGGTCTCGGGTACATCAACTAGAGG 913
|| |||| ||||||||||||||| ||||||||||| |||||||||| || ||||| ||||
Sbjct 943 TTTCCTTAGAGAGGAAGAAATCATATGATGCTGATGGGTCTCGGGTCCAGCAACTCGAGG 1002
Query 914 AACGCCTCAAGAATCTCGAGCTGATGGAATTGGACTTGAAGTTGGACTGTTTGAAGTCAA 973
|||| || || | | || | | | ||| || | || | |||||||||||
Sbjct 1003 AACG-----AG----TC-A----A-GG-A-T--A-TTG-AGCT-GA-T-TTTGAAGTCAA 1038
Query 974 AGCTTGAGGAAGTTTCC-CTG-GA-GAAGAAGAAAGCAGATGCTG--GGGTCCAACAACT 1028
||||||||||||||||| | | || |||||||||||||||||||| ||||| | |
Sbjct 1039 AGCTTGAGGAAGTTTCCTCGGAGAAGAAGAAGAAAGCAGATGCTGATGGGTCT--C---T 1093
Query 1029 AGAGGGA-AGCGTCAAGAATCATGTGATAATGGTGTCGGATCTCAAAGTTGAACTGGACA 1087
||||| | || || ||||||| || | |||||||||| ||||||||||||||| ||||||
Sbjct 1094 AGAGG-ATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAAAGTTGAAGTGGACA 1152
Query 1088 ACGAGAAGGCCAAATCTTCCGCTGATGGATTTTTGTTGGTTGA 1130
||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1153 ACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTGGTTGA 1195
Score = 134 bits (72), Expect = 2e-30
Identities = 216/279 (77%), Gaps = 35/279 (13%)
Strand=Plus/Plus
Query 798 TGAGCCGGTGGATTTGGACTTTAAG-ATGGACCCTTTGAAGACAAA-GATTGAGGAGGTT 855
||||| | || || ||||| | ||| | |||| ||||||| |||| | | | ||||||
Sbjct 1730 TGAGCTGATGAATATGGACATGAAGCA-GGACAGTTTGAAGTCAAATCA-TCATGAGGTT 1787
Query 856 CCCTTGGAGAGG--AAGAAATC-AGATGATGCTGATTG-GTCTCGGGTACATCAACTAGA 911
|||| || ||| |||||| | |||||||||||| || ||||||| | || |||||||
Sbjct 1788 TCCTT-GA-AGGACAAGAAA-CGAGATGATGCTGA-TGAGTCTCGGTTCCAAAAACTAGA 1843
Query 912 GGAACGCCTCAAGAATCTCGAGCTGATGGAATTGGACTTGAAGTTGGACTGTTTGAAGTC 971
|||||||||||||||||||||| | || | | ||| | |||||||||||||| ||
Sbjct 1844 GGAACGCCTCAAGAATCTCGAG-T--TG-A-T-GGA---G---TTGGACTGTTTGAAATC 1891
Query 972 AAAGCTTGAGGAAGTTTCCCTGGAGAAGAAGAAAGCAGATGCTG---GG----G--TCCA 1022
|||||||||||||||||| | |||| |||||||||||||||| || | ||||
Sbjct 1892 AAAGCTTGAGGAAGTTTCGATAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGGTCCA 1951
Query 1023 ACAACTAGAGGGAA-GCGTCAAGAATCATGTGATAATGG 1060
|| |||||||| || || ||||||||| || | ||||||
Sbjct 1952 ACGACTAGAGG-AACGCCTCAAGAATCTTGAGCTAATGG 1989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5