BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935131

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685...   279    3e-74


> AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685805-17689928 
REVERSE LENGTH=2309
Length=2309

 Score =  279 bits (151),  Expect = 3e-74
 Identities = 263/314 (84%), Gaps = 20/314 (6%)
 Strand=Plus/Plus

Query  697   TGGAATGGTTGAAATCAAAGCTTGA-TGAGGTTTCCTTGATGAGGAAGAAAGCAGATGCT  755
             |||| || ||||||||||||||||| | | |||||  | | ||  |||||||||||||||
Sbjct  1993  TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT  2051

Query  756   G--A----T--G-TCCAACAACTCGATGAACGTGTTAAAAAACTTGAGCTGAT-GAACTT  805
             |  |    |  | |||||| ||| || ||||||||||| |||||||||||||| ||| ||
Sbjct  2052  GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAA-TT  2110

Query  806   -G--GATTTGAAAACAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAAATGATGC  862
              |  ||||||||  |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  2111  GGACGATTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGC  2170

Query  863   TGATAGGTCTCGGGTCCAACAACTCGAGGAATGCTTCAAGAACCTTGAGATGGTGGTGTT  922
             | |||||||||||||| | |||||||||||||||||||||||||||||| || |||||||
Sbjct  2171  TTATAGGTCTCGGGTCTACCAACTCGAGGAATGCTTCAAGAACCTTGAGCTGATGGTGTT  2230

Query  923   GGATCTCAAAGTTAAACTTGG-CAAGGAGGAGGCCAAATCTTCTGCTGATG-ATTTTTTG  980
             |||| |||||||| |||| || |||| |  ||| |||||||| || ||||| |||||| |
Sbjct  2231  GGATTTCAAAGTTGAACT-GGACAAGAAAAAGGACAAATCTTGTGATGATGGATTTTT-G  2288

Query  981   CTGGTCGACGAGTT  994
              |||||||||||||
Sbjct  2289  TTGGTCGACGAGTT  2302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53563981515


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5