BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935133
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42500.1 | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2... 1905 0.0
AT3G58500.1 | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3... 1389 0.0
> AT2G42500.1 | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2:17697667-17701417
REVERSE LENGTH=1565
Length=1565
Score = 1905 bits (1031), Expect = 0.0
Identities = 1078/1100 (98%), Gaps = 5/1100 (0%)
Strand=Plus/Plus
Query 1 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGGCTTCCCCTAATTTGGAAACCTAG 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 81 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGACTTCCCCTAATTTGGAAACCTAG 140
Query 61 TCCTGTTTCCTGATCTGTTTTCCGGATCGGACGAGAGGAGAGACGAAGTAACGAAAATGG 120
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 141 TCCTGTTTCCTGATCTGTTTTCCGGATCGGAC-----GAGAGACGAATTAACGAAAATGG 195
Query 121 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 196 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTCA 255
Query 181 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 315
Query 241 TCTTAATGGATGAAAGCAACGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 375
Query 301 TTCATGGACAGTTCCATGATCTTGCTGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 376 TTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 435
Query 361 CCAATTATCTGTTTATGGGAGACTATGTGGACCGCGGTTATTATTCTGTTGAAACTGTTA 420
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 436 CCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTA 495
Query 421 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 555
Query 481 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTGCGAAAGTACG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 556 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTACGAAAGTACG 615
Query 541 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 675
Query 601 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 735
Query 661 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTTCCCCATGAAGGGCCAATGTGTGACT 720
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 736 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCCCCATGAAGGGCCGATGTGTGACT 795
Query 721 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGAGGTGCCGGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 796 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGGGGTGCCGGAT 855
Query 781 ATACGTTTGGTCAGGATATATCCGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 840
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 856 ATACATTTGGTCAGGATATATCTGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 915
Query 841 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 975
Query 901 CTATTTTCAGTGCACCAAACTATTGTTATCGTTGTGGGAACATGGCCTCGATTCTTGAGG 960
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 976 CTATTTTCAGTGCACCAAACTATTGTTACCGTTGTGGGAACATGGCCTCGATTCTTGAGG 1035
Query 961 TCGACGACTGCAGGAACCACACCTTCATTCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1020
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1036 TCGACGACTGCAGGAACCACACCTTCATCCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1095
Query 1021 CAGATGTCACCCGAAGGACTCCAGACTATTTTCTGTGATCACTGGACACAGACTCATCTC 1080
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1096 CAGACGTCACCCGAAGGACTCCAGACTATTTCCTGTGATCACTGGACACAGACTCATCTC 1155
Query 1081 AATCAGCAGCTGCAGGCACC 1100
||||||||||||||||||||
Sbjct 1156 AATCAGCAGCTGCAGGCACC 1175
> AT3G58500.1 | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3:21635226-21639105
REVERSE LENGTH=1413
Length=1413
Score = 1389 bits (752), Expect = 0.0
Identities = 969/1073 (90%), Gaps = 18/1073 (2%)
Strand=Plus/Plus
Query 1 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGGCTTCCCCTAATTTGGAAACC-TA 59
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 67 GAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGGAAACCTTT 126
Query 60 GTCCT-GTTTCCTGATCTGTTTTCCGGATCGGAC--G-A-G--AG--GA-GA-GACGAAG 108
| ||| |||| ||||||||||||||||||| ||| | | | || || || |||| |
Sbjct 127 G-CCTCGTTT-CTGATCTGTTTTCCGGATCCGACTTGAAGGAAAGAAGACGACGACGCAC 184
Query 109 TAAC-GAAA-ATGGGCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCA 166
|| | ||| |||||||||||||| |||| ||||| |||||| | ||||| ||||||||
Sbjct 185 TACCAAAAACATGGGCGCGAATTCGCTTCCAACGGATGCAACCCTCGATCTAGATGAGCA 244
Query 167 GATCTCGCAGCTTATGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGA 226
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 245 GATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATTATGTGA 304
Query 227 GAAAGCCAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTGAAAAGCCCTGTGAC 286
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 305 GAAAGCTAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTTAAAAGCCCTGTGAC 364
Query 287 AATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCTGAGCTTTTCCGTATAGGGGG 346
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 365 AATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATTGGGGG 424
Query 347 AATGTGCCCTGATACCAATTATCTGTTTATGGGAGACTATGTGGACCGCGGTTATTATTC 406
|| ||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 425 AAAGTGTCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATATTATTC 484
Query 407 TGTTGAAACTGTTACGCTGTTAGTCGCCTT-AAAGATGCGATATCCTCAGCGAATCACTA 465
||| ||||||||||||||||| || | ||| |||| | || ||||| |||||||||||||
Sbjct 485 TGTGGAAACTGTTACGCTGTTGGTTGGCTTGAAAG-TACGGTATCCACAGCGAATCACTA 543
Query 466 TTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAAT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAAT 603
Query 526 GTCTGCGAAAGTACGGCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATT 585
||||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 604 GTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGACTATT 663
Query 586 TTCCTCTGACAGCCTTGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCAT 645
| || |||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 664 TCCCACTGACAGCCTTGGTGGAGTCGGAAATATTCTGCCTTCACGGTGGATTATCACCAT 723
Query 646 CTATCGAGACCCTTGACAACATAAGGAATTTTGATCGAGTTCAAGAAGTTCCCCATGAAG 705
| |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct 724 CCATCGAGACCCTTGACAACATTAGGAACTTTGATCGGGTTCAAGAAGTTCCACATGAAG 783
Query 706 GGCCAATGTGTGACTTATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTC 765
|||| ||||||||||||||||||||||| || |||||| ||||||| ||||| |||||||
Sbjct 784 GGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGCTGGGGAATCTCTC 843
Query 766 CTCGAGGTGCCGGATATACGTTTGGTCAGGATATATCCGAACAATTCAATCACACAAACA 825
|||| ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||
Sbjct 844 CTCGTGGTGCTGGATATACATTTGGTCAGGATATTTCGGAACAATTCAATCACACTAACA 903
Query 826 ACTTAAAGCTGATCGCCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACG 885
|||||||||||||||||||||| || ||| | ||||||||||||| ||| ||||| ||||
Sbjct 904 ACTTAAAGCTGATCGCCCGAGCGCATCAGCTCGTTATGGATGGATTCAATTGGGCACACG 963
Query 886 AGCAAAAAGTGGTTACTATTTTCAGTGCACCAAACTATTGTTATCGTTGTGGGAACATGG 945
||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 964 AGCAAAAAGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAACATGG 1023
Query 946 CCTCGATTCTTGAGGTCGACGACTGCAGGAACCACACCTTCATTCAGTTTGAACCAGCAC 1005
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1024 CCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACCAGCAC 1083
Query 1006 CGAGGAGAGGAGAACCAGATGTCACCCGAAGGACTCCAGACTATTTTCTGTGA 1058
||||||||||||| |||||||| ||||||||||| || |||||||| || |||
Sbjct 1084 CGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTTTGA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5